Description Usage Arguments Details Value Author(s) Examples
This function serves as a wrapper around the cleaning and processing of incidence data. The functions for these are available in ...
1 2 | incidence.from.DS1(case_count, species, disease, case_type = c("scc", "sc",
"cc", "scd", "sd", "cd", "ALL"), location, merge_rule = c("median"))
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case_count |
dataframe containing data stream 1 to be processed |
species |
string giving species in which disease incidence will be extracted |
disease |
string specifying disease of interest |
case_type |
string specifying column name from which incidence is extracted; one of "scc" (suspected and confirmed cases), "sc" (suspected cases), "cc" (confirmed cases), "scD" (suspected and confirmed deaths), "sd" (suspected deaths), or "cd" (confirmed deaths). |
location |
string specifying location for which incidence will be computed |
merge_rule |
string to specify how merging should be made when duplicated entries exist. At the moment only "median" is supported. |
XXX
a dataframe containing incidence and cumulative incidence obtained from merged_dat.
Pierre Nouvellet, Anne Cori and Sangeeta Bhatia
1 | # to be written
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