Files in annecori/mRIIDSprocessData
Epidemiological forcasting using real-time data
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/aggregate_projections.R
R/disaggregation.R
R/get_incid_DS1.R
R/importation_risk.R
R/incidence_data_cleanup.R
R/incidence_data_processing.R
R/likelihood.R
R/merge_dup_lines_DS1.R
R/model_selection.R
R/project.R
R/spatial_processing.R
R/util.R
README.md
data/CaseCounts/README
data/CaseCounts/drc/14_to_17_may.csv
data/CaseCounts/drc/21-May-2018.csv
data/CaseCounts/drc/21-May-2018_ADM2.csv
data/CaseCounts/drc/22_may_2018.csv
data/CaseCounts/drc/as_of_17_may.csv
data/CaseCounts/drc/projected_2.5_14.csv
data/CaseCounts/drc/projected_2.5_16.csv
data/CaseCounts/drc/projected_4.3_14.csv
data/CaseCounts/drc/projected_4.3_16.csv
data/CaseCounts/processed/Guinea_wide.csv
data/CaseCounts/processed/HealthMap_Ebola_tall.csv
data/CaseCounts/processed/HealthMap_Ebola_wide.csv
data/CaseCounts/processed/Liberia_wide.csv
data/CaseCounts/processed/SIERRALEONE_wide.csv
data/CaseCounts/processed/WHO_bycountry.csv
data/CaseCounts/processed/WHO_bycountry_wide.csv
data/CaseCounts/processed/WHO_bydistricts.csv
data/CaseCounts/processed/WHO_wide.csv
data/CaseCounts/processed/processed_who_sl_2014-11-12.csv
data/CaseCounts/processed/processed_who_sl_2014-11-19.csv
data/CaseCounts/processed/processed_who_sl_2014-11-26.csv
data/CaseCounts/processed/processed_who_sl_2014-12-03.csv
data/CaseCounts/processed/processed_who_sl_2014-12-10.csv
data/CaseCounts/processed/processed_who_sl_2014-12-17.csv
data/CaseCounts/processed/processed_who_sl_2014-12-24.csv
data/CaseCounts/processed/processed_who_sl_2014-12-31.csv
data/CaseCounts/processed/processed_who_sl_2015-01-07.csv
data/CaseCounts/processed/processed_who_sl_2015-01-14.csv
data/CaseCounts/processed/processed_who_sl_2015-01-21.csv
data/CaseCounts/processed/processed_who_sl_2015-01-28.csv
data/CaseCounts/processed/processed_who_sl_2015-02-04.csv
data/CaseCounts/processed/processed_who_sl_2015-02-11.csv
data/CaseCounts/processed/processed_who_sl_2015-02-18.csv
data/CaseCounts/processed/processed_who_sl_2015-02-25.csv
data/CaseCounts/processed/processed_who_sl_2015-03-04.csv
data/CaseCounts/processed/processed_who_sl_2015-03-11.csv
data/CaseCounts/processed/processed_who_sl_2015-03-18.csv
data/CaseCounts/processed/processed_who_sl_2015-03-25.csv
data/CaseCounts/processed/processed_who_sl_2015-04-01.csv
data/CaseCounts/processed/processed_who_sl_2015-04-08.csv
data/CaseCounts/processed/processed_who_sl_2015-04-15.csv
data/CaseCounts/processed/processed_who_sl_2015-04-22.csv
data/CaseCounts/processed/processed_who_sl_2015-04-29.csv
data/CaseCounts/processed/processed_who_sl_2015-05-06.csv
data/CaseCounts/processed/processed_who_sl_2015-05-13.csv
data/CaseCounts/processed/processed_who_sl_2015-05-20.csv
data/CaseCounts/processed/processed_who_sl_2015-05-27.csv
data/CaseCounts/processed/processed_who_sl_2015-06-03.csv
data/CaseCounts/processed/processed_who_sl_2015-06-10.csv
data/CaseCounts/processed/processed_who_sl_2015-06-17.csv
data/CaseCounts/processed/processed_who_sl_2015-06-24.csv
data/CaseCounts/processed/processed_who_sl_2015-07-01.csv
data/CaseCounts/processed/processed_who_sl_2015-07-08.csv
data/CaseCounts/processed/processed_who_sl_2015-07-15.csv
data/CaseCounts/processed/processed_who_sl_2015-07-22.csv
data/CaseCounts/processed/processed_who_sl_2015-07-29.csv
data/CaseCounts/processed/processed_who_sl_2015-08-05.csv
data/CaseCounts/processed/processed_who_sl_2015-08-12.csv
data/CaseCounts/processed/processed_who_sl_2015-08-19.csv
data/CaseCounts/processed/processed_who_sl_2015-08-26.csv
data/CaseCounts/processed/processed_who_sl_2015-09-02.csv
data/CaseCounts/processed/processed_who_sl_2015-09-09.csv
data/CaseCounts/processed/processed_who_sl_2015-09-16.csv
data/CaseCounts/processed/processed_who_sl_2015-09-23.csv
data/CaseCounts/processed/processed_who_sl_2015-09-30.csv
data/CaseCounts/processed/processed_who_sl_2015-10-07.csv
data/CaseCounts/processed/processed_who_sl_2015-10-14.csv
data/CaseCounts/processed/processed_who_sl_2015-10-21.csv
data/CaseCounts/processed/processed_who_sl_2015-10-28.csv
data/CaseCounts/processed/processed_who_sl_2015-11-04.csv
data/CaseCounts/processed/processed_who_sl_2015-11-11.csv
data/CaseCounts/processed/processed_who_sl_2015-11-18.csv
data/CaseCounts/processed/processed_who_sl_2015-11-25.csv
data/CaseCounts/processed/processed_who_sl_2015-12-02.csv
data/CaseCounts/processed/processed_who_sl_2015-12-09.csv
data/CaseCounts/processed/processed_who_sl_2015-12-16.csv
data/CaseCounts/processed/processed_who_sl_2015-12-23.csv
data/CaseCounts/processed/processed_who_sl_2015-12-30.csv
data/CaseCounts/processed/processed_who_sl_2016-01-06.csv
data/CaseCounts/processed/processed_who_sl_2016-01-13.csv
data/CaseCounts/processed/processed_who_sl_2016-01-20.csv
data/CaseCounts/processed/processed_who_sl_2016-01-27.csv
data/CaseCounts/processed/processed_who_sl_2016-02-03.csv
data/CaseCounts/processed/processed_who_sl_2016-02-10.csv
data/CaseCounts/processed/processed_who_sl_2016-02-17.csv
data/CaseCounts/processed/processed_who_sl_2016-02-24.csv
data/CaseCounts/processed/processed_who_sl_2016-03-02.csv
data/CaseCounts/processed/processed_who_sl_2016-03-09.csv
data/CaseCounts/processed/processed_who_sl_2016-03-16.csv
data/CaseCounts/processed/processed_who_sl_2016-03-23.csv
data/CaseCounts/processed/processed_who_sl_2016-03-30.csv
data/CaseCounts/processed/processed_who_sl_2016-04-06.csv
data/CaseCounts/processed/processed_who_sl_2016-04-13.csv
data/CaseCounts/processed/processed_who_sl_2016-04-20.csv
data/CaseCounts/processed/processed_who_sl_2016-04-27.csv
data/CaseCounts/processed/processed_who_sl_2016-05-04.csv
data/CaseCounts/processed/processed_who_sl_2016-05-11.csv
data/CaseCounts/processed/sl_weekly_tall.csv
data/CaseCounts/processed/who_sitrep_wide_sl_2016-05-11.csv
data/CaseCounts/raw/Copy of ProMED_Ebola_2014-2016 Curation.csv
data/CaseCounts/raw/Copy of ProMED_Ebola_2014-2016 Curation.xlsx
data/CaseCounts/raw/Ebola outbreak DRC 2014 curated data.xlsx
data/CaseCounts/raw/HealthMap_Ebola_GNE_WHO.csv
data/CaseCounts/raw/HealthMap_Ebola_ReliefWeb.csv
data/CaseCounts/raw/ProMED Ebola DRC 2018 data curated.csv
data/CaseCounts/raw/ProMED_Ebola_2014-2016.csv
data/CaseCounts/raw/ProMED_ebola_drc_2018_fixed_colnames.csv
data/CaseCounts/raw/drc_cumulative.csv
data/CaseCounts/raw/promed_drc.csv
data/CaseCounts/raw/promed_ebola_2014.csv
data/CaseCounts/raw/who_sl_2014-11-12.csv
data/CaseCounts/raw/who_sl_2014-11-19.csv
data/CaseCounts/raw/who_sl_2014-11-26.csv
data/CaseCounts/raw/who_sl_2014-12-03.csv
data/CaseCounts/raw/who_sl_2014-12-10.csv
data/CaseCounts/raw/who_sl_2014-12-17.csv
data/CaseCounts/raw/who_sl_2014-12-24.csv
data/CaseCounts/raw/who_sl_2014-12-31.csv
data/CaseCounts/raw/who_sl_2015-01-07.csv
data/CaseCounts/raw/who_sl_2015-01-14.csv
data/CaseCounts/raw/who_sl_2015-01-21.csv
data/CaseCounts/raw/who_sl_2015-01-28.csv
data/CaseCounts/raw/who_sl_2015-02-04.csv
data/CaseCounts/raw/who_sl_2015-02-11.csv
data/CaseCounts/raw/who_sl_2015-02-18.csv
data/CaseCounts/raw/who_sl_2015-02-25.csv
data/CaseCounts/raw/who_sl_2015-03-04.csv
data/CaseCounts/raw/who_sl_2015-03-11.csv
data/CaseCounts/raw/who_sl_2015-03-18.csv
data/CaseCounts/raw/who_sl_2015-03-25.csv
data/CaseCounts/raw/who_sl_2015-04-01.csv
data/CaseCounts/raw/who_sl_2015-04-08.csv
data/CaseCounts/raw/who_sl_2015-04-15.csv
data/CaseCounts/raw/who_sl_2015-04-22.csv
data/CaseCounts/raw/who_sl_2015-04-29.csv
data/CaseCounts/raw/who_sl_2015-05-06.csv
data/CaseCounts/raw/who_sl_2015-05-13.csv
data/CaseCounts/raw/who_sl_2015-05-20.csv
data/CaseCounts/raw/who_sl_2015-05-27.csv
data/CaseCounts/raw/who_sl_2015-06-03.csv
data/CaseCounts/raw/who_sl_2015-06-10.csv
data/CaseCounts/raw/who_sl_2015-06-17.csv
data/CaseCounts/raw/who_sl_2015-06-24.csv
data/CaseCounts/raw/who_sl_2015-07-01.csv
data/CaseCounts/raw/who_sl_2015-07-08.csv
data/CaseCounts/raw/who_sl_2015-07-15.csv
data/CaseCounts/raw/who_sl_2015-07-22.csv
data/CaseCounts/raw/who_sl_2015-07-29.csv
data/CaseCounts/raw/who_sl_2015-08-05.csv
data/CaseCounts/raw/who_sl_2015-08-12.csv
data/CaseCounts/raw/who_sl_2015-08-19.csv
data/CaseCounts/raw/who_sl_2015-08-26.csv
data/CaseCounts/raw/who_sl_2015-09-02.csv
data/CaseCounts/raw/who_sl_2015-09-09.csv
data/CaseCounts/raw/who_sl_2015-09-16.csv
data/CaseCounts/raw/who_sl_2015-09-23.csv
data/CaseCounts/raw/who_sl_2015-09-30.csv
data/CaseCounts/raw/who_sl_2015-10-07.csv
data/CaseCounts/raw/who_sl_2015-10-14.csv
data/CaseCounts/raw/who_sl_2015-10-21.csv
data/CaseCounts/raw/who_sl_2015-10-28.csv
data/CaseCounts/raw/who_sl_2015-11-04.csv
data/CaseCounts/raw/who_sl_2015-11-11.csv
data/CaseCounts/raw/who_sl_2015-11-18.csv
data/CaseCounts/raw/who_sl_2015-11-25.csv
data/CaseCounts/raw/who_sl_2015-12-02.csv
data/CaseCounts/raw/who_sl_2015-12-09.csv
data/CaseCounts/raw/who_sl_2015-12-16.csv
data/CaseCounts/raw/who_sl_2015-12-23.csv
data/CaseCounts/raw/who_sl_2015-12-30.csv
data/CaseCounts/raw/who_sl_2016-01-06.csv
data/CaseCounts/raw/who_sl_2016-01-13.csv
data/CaseCounts/raw/who_sl_2016-01-20.csv
data/CaseCounts/raw/who_sl_2016-01-27.csv
data/CaseCounts/raw/who_sl_2016-02-03.csv
data/CaseCounts/raw/who_sl_2016-02-10.csv
data/CaseCounts/raw/who_sl_2016-02-17.csv
data/CaseCounts/raw/who_sl_2016-02-24.csv
data/CaseCounts/raw/who_sl_2016-03-02.csv
data/CaseCounts/raw/who_sl_2016-03-09.csv
data/CaseCounts/raw/who_sl_2016-03-16.csv
data/CaseCounts/raw/who_sl_2016-03-23.csv
data/CaseCounts/raw/who_sl_2016-03-30.csv
data/CaseCounts/raw/who_sl_2016-04-06.csv
data/CaseCounts/raw/who_sl_2016-04-13.csv
data/CaseCounts/raw/who_sl_2016-04-20.csv
data/CaseCounts/raw/who_sl_2016-04-27.csv
data/CaseCounts/raw/who_sl_2016-05-04.csv
data/CaseCounts/raw/who_sl_2016-05-11.csv
data/CaseCounts/who/WHO_bycountry.csv
data/CaseCounts/who/WHO_bydistricts.csv
data/CaseCounts/who/rstb20160308supp1.csv
data/CaseCounts/who/rstb20160308supp2.xlsx
data/CaseCounts/who/sl_wide.csv
data/Geography/Africa_SHP/Africa.dbf
data/Geography/Africa_SHP/Africa.shp
data/Geography/Africa_SHP/Africa.shx
data/Geography/AfricanCountries/AfricanCountires.dbf
data/Geography/AfricanCountries/AfricanCountires.prj
data/Geography/AfricanCountries/AfricanCountires.shp
data/Geography/AfricanCountries/AfricanCountires.shx
data/Geography/GIN_adm_shp/GIN_adm0.cpg
data/Geography/GIN_adm_shp/GIN_adm0.csv
data/Geography/GIN_adm_shp/GIN_adm0.dbf
data/Geography/GIN_adm_shp/GIN_adm0.prj
data/Geography/GIN_adm_shp/GIN_adm0.shp
data/Geography/GIN_adm_shp/GIN_adm0.shx
data/Geography/GIN_adm_shp/GIN_adm1.cpg
data/Geography/GIN_adm_shp/GIN_adm1.csv
data/Geography/GIN_adm_shp/GIN_adm1.dbf
data/Geography/GIN_adm_shp/GIN_adm1.prj
data/Geography/GIN_adm_shp/GIN_adm1.shp
data/Geography/GIN_adm_shp/GIN_adm1.shx
data/Geography/GIN_adm_shp/GIN_adm2.cpg
data/Geography/GIN_adm_shp/GIN_adm2.csv
data/Geography/GIN_adm_shp/GIN_adm2.dbf
data/Geography/GIN_adm_shp/GIN_adm2.prj
data/Geography/GIN_adm_shp/GIN_adm2.shp
data/Geography/GIN_adm_shp/GIN_adm2.shx
data/Geography/GIN_adm_shp/GIN_adm3.cpg
data/Geography/GIN_adm_shp/GIN_adm3.csv
data/Geography/GIN_adm_shp/GIN_adm3.dbf
data/Geography/GIN_adm_shp/GIN_adm3.prj
data/Geography/GIN_adm_shp/GIN_adm3.shp
data/Geography/GIN_adm_shp/GIN_adm3.shx
data/Geography/GIN_adm_shp/license.txt
data/Geography/GravityModel/angola_adm1_centroids.csv
data/Geography/GravityModel/global_flight_data/Airports_2010.csv
data/Geography/GravityModel/global_flight_data/Prediction_Monthly.csv
data/Geography/GravityModel/processed/ est_risk_dist 1 .csv
data/Geography/GravityModel/processed/ est_risk_dist 2 .csv
data/Geography/GravityModel/processed/WHOcentroids.csv
data/Geography/GravityModel/processed/all_centroids.csv
data/Geography/GravityModel/processed/drc_metadata.csv
data/Geography/GravityModel/processed/drc_neighbors_area.csv
data/Geography/GravityModel/processed/drc_neighbors_pops.csv
data/Geography/GravityModel/processed/estimated_flow_from_to_gravity_model_powers_Nfrom_1_Nto_1_dist_1.csv
data/Geography/GravityModel/processed/estimated_flow_from_to_gravity_model_powers_Nfrom_1_Nto_1_dist_1pn.csv
data/Geography/GravityModel/processed/estimated_flow_from_to_gravity_model_powers_Nfrom_1_Nto_1_dist_2.csv
data/Geography/GravityModel/processed/estimated_flow_from_to_gravity_model_powers_Nfrom_1_Nto_1_dist_2pn.csv
data/Geography/GravityModel/processed/sb_estimated_flow_from_to_gravity_model_powers_Nfrom_1_Nto_1_dist_1.csv
data/Geography/GravityModel/processed/sb_estimated_flow_from_to_gravity_model_powers_Nfrom_1_Nto_1_dist_2.csv
data/Geography/GravityModel/raw/adm0.txt
data/Geography/GravityModel/raw/adm0_centroids.tsv
data/Geography/GravityModel/raw/adm0_centroids_fixed.tsv
data/Geography/GravityModel/raw/adm1.txt
data/Geography/GravityModel/raw/adm1_centroids.tsv
data/Geography/GravityModel/raw/adm1_centroids_fixed.tsv
data/Geography/GravityModel/raw/adm2-fixed.txt
data/Geography/GravityModel/raw/adm2.txt
data/Geography/LBR_adm_shp/LBR_adm0.cpg
data/Geography/LBR_adm_shp/LBR_adm0.csv
data/Geography/LBR_adm_shp/LBR_adm0.dbf
data/Geography/LBR_adm_shp/LBR_adm0.prj
data/Geography/LBR_adm_shp/LBR_adm0.shp
data/Geography/LBR_adm_shp/LBR_adm0.shx
data/Geography/LBR_adm_shp/LBR_adm1.cpg
data/Geography/LBR_adm_shp/LBR_adm1.csv
data/Geography/LBR_adm_shp/LBR_adm1.dbf
data/Geography/LBR_adm_shp/LBR_adm1.prj
data/Geography/LBR_adm_shp/LBR_adm1.shp
data/Geography/LBR_adm_shp/LBR_adm1.shx
data/Geography/LBR_adm_shp/LBR_adm2.cpg
data/Geography/LBR_adm_shp/LBR_adm2.csv
data/Geography/LBR_adm_shp/LBR_adm2.dbf
data/Geography/LBR_adm_shp/LBR_adm2.prj
data/Geography/LBR_adm_shp/LBR_adm2.shp
data/Geography/LBR_adm_shp/LBR_adm2.shx
data/Geography/LBR_adm_shp/LBR_adm3.cpg
data/Geography/LBR_adm_shp/LBR_adm3.csv
data/Geography/LBR_adm_shp/LBR_adm3.dbf
data/Geography/LBR_adm_shp/LBR_adm3.prj
data/Geography/LBR_adm_shp/LBR_adm3.shp
data/Geography/LBR_adm_shp/LBR_adm3.shx
data/Geography/LBR_adm_shp/license.txt
data/Geography/README
data/Geography/SLE_adm_shp/SLE_adm0.cpg
data/Geography/SLE_adm_shp/SLE_adm0.csv
data/Geography/SLE_adm_shp/SLE_adm0.dbf
data/Geography/SLE_adm_shp/SLE_adm0.prj
data/Geography/SLE_adm_shp/SLE_adm0.shp
data/Geography/SLE_adm_shp/SLE_adm0.shx
data/Geography/SLE_adm_shp/SLE_adm1.cpg
data/Geography/SLE_adm_shp/SLE_adm1.csv
data/Geography/SLE_adm_shp/SLE_adm1.dbf
data/Geography/SLE_adm_shp/SLE_adm1.prj
data/Geography/SLE_adm_shp/SLE_adm1.shp
data/Geography/SLE_adm_shp/SLE_adm1.shx
data/Geography/SLE_adm_shp/SLE_adm2.cpg
data/Geography/SLE_adm_shp/SLE_adm2.csv
data/Geography/SLE_adm_shp/SLE_adm2.dbf
data/Geography/SLE_adm_shp/SLE_adm2.prj
data/Geography/SLE_adm_shp/SLE_adm2.shp
data/Geography/SLE_adm_shp/SLE_adm2.shx
data/Geography/SLE_adm_shp/SLE_adm3.cpg
data/Geography/SLE_adm_shp/SLE_adm3.csv
data/Geography/SLE_adm_shp/SLE_adm3.dbf
data/Geography/SLE_adm_shp/SLE_adm3.prj
data/Geography/SLE_adm_shp/SLE_adm3.shp
data/Geography/SLE_adm_shp/SLE_adm3.shx
data/Geography/SLE_adm_shp/license.txt
data/Geography/SierraLeone_shapefile/Sierra Leone.cpg
data/Geography/SierraLeone_shapefile/Sierra Leone.dbf
data/Geography/SierraLeone_shapefile/Sierra Leone.prj
data/Geography/SierraLeone_shapefile/Sierra Leone.shp
data/Geography/SierraLeone_shapefile/Sierra Leone.shx
data/Geography/drc_moritz/movement/gravity_namibia_predict_DRC.csv
data/Geography/drc_moritz/movement/radiation_namibia_predict_DRC.csv
data/Geography/drc_moritz/shp/congo_angola.cpg
data/Geography/drc_moritz/shp/congo_angola.dbf
data/Geography/drc_moritz/shp/congo_angola.prj
data/Geography/drc_moritz/shp/congo_angola.qpj
data/Geography/drc_moritz/shp/congo_angola.shp
data/Geography/drc_moritz/shp/congo_angola.shx
data/Geography/drc_neighbors_areas.csv
data/Geography/gadm36_AGO_shp/gadm36_AGO_0.cpg
data/Geography/gadm36_AGO_shp/gadm36_AGO_0.dbf
data/Geography/gadm36_AGO_shp/gadm36_AGO_0.prj
data/Geography/gadm36_AGO_shp/gadm36_AGO_0.shp
data/Geography/gadm36_AGO_shp/gadm36_AGO_0.shx
data/Geography/gadm36_AGO_shp/gadm36_AGO_1.cpg
data/Geography/gadm36_AGO_shp/gadm36_AGO_1.dbf
data/Geography/gadm36_AGO_shp/gadm36_AGO_1.prj
data/Geography/gadm36_AGO_shp/gadm36_AGO_1.shp
data/Geography/gadm36_AGO_shp/gadm36_AGO_1.shx
data/Geography/gadm36_AGO_shp/gadm36_AGO_2.cpg
data/Geography/gadm36_AGO_shp/gadm36_AGO_2.dbf
data/Geography/gadm36_AGO_shp/gadm36_AGO_2.prj
data/Geography/gadm36_AGO_shp/gadm36_AGO_2.shp
data/Geography/gadm36_AGO_shp/gadm36_AGO_2.shx
data/Geography/gadm36_AGO_shp/gadm36_AGO_3.cpg
data/Geography/gadm36_AGO_shp/gadm36_AGO_3.dbf
data/Geography/gadm36_AGO_shp/gadm36_AGO_3.prj
data/Geography/gadm36_AGO_shp/gadm36_AGO_3.shp
data/Geography/gadm36_AGO_shp/gadm36_AGO_3.shx
data/Geography/gadm36_AGO_shp/license.txt
data/Geography/gadm36_BDI_shp/gadm36_BDI_0.cpg
data/Geography/gadm36_BDI_shp/gadm36_BDI_0.dbf
data/Geography/gadm36_BDI_shp/gadm36_BDI_0.prj
data/Geography/gadm36_BDI_shp/gadm36_BDI_0.shp
data/Geography/gadm36_BDI_shp/gadm36_BDI_0.shx
data/Geography/gadm36_BDI_shp/gadm36_BDI_1.cpg
data/Geography/gadm36_BDI_shp/gadm36_BDI_1.dbf
data/Geography/gadm36_BDI_shp/gadm36_BDI_1.prj
data/Geography/gadm36_BDI_shp/gadm36_BDI_1.shp
data/Geography/gadm36_BDI_shp/gadm36_BDI_1.shx
data/Geography/gadm36_BDI_shp/gadm36_BDI_2.cpg
data/Geography/gadm36_BDI_shp/gadm36_BDI_2.dbf
data/Geography/gadm36_BDI_shp/gadm36_BDI_2.prj
data/Geography/gadm36_BDI_shp/gadm36_BDI_2.shp
data/Geography/gadm36_BDI_shp/gadm36_BDI_2.shx
data/Geography/gadm36_BDI_shp/gadm36_BDI_3.cpg
data/Geography/gadm36_BDI_shp/gadm36_BDI_3.dbf
data/Geography/gadm36_BDI_shp/gadm36_BDI_3.prj
data/Geography/gadm36_BDI_shp/gadm36_BDI_3.shp
data/Geography/gadm36_BDI_shp/gadm36_BDI_3.shx
data/Geography/gadm36_BDI_shp/gadm36_BDI_4.cpg
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reports/milestone-6/ms6-figures/who_vs_hm_vs_pm-incid.png
reports/milestone-6/ms6-figures/workflow.png
reports/milestone-6/ms6.bib
reports/milestone-6/review-comments.tex
reports/milestone-6/titlepage.pdf
reports/milestone-6/titlepage.tex
reports/milestone-6/workflow.pdf
reports/milestone-6/workflow.tex
reports/output/projections_restim_2015-02-12.csv
reports/output/projections_restim_2015-02-19.csv
reports/output/projections_restim_2015-02-26.csv
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reports/output/training_restim_2015-02-12.csv
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reports/output/training_restim_2016-01-28.csv
reports/population_density.Rmd
reports/promed_drc.Rmd
reports/relative_risk.Rmd
reports/risk_profile_map.Rmd
reports/risk_profile_map2.Rmd
reports/website-blurb.tex
reports/who.bib
reports/who_district_data_cleanup.Rmd
reports/who_district_data_eda.Rmd
src/stan_files/disaggregation.stan
src/stan_files/full_spatial_model.stan
src/stan_files/full_spatial_model_optimised.stan
src/stan_files/gravity_model.stan
src/stan_files/multiple_location.stan
src/stan_files/single_location.stan
tests/testthat/before_interpolation.csv
tests/testthat/test_aggregate_projections.R
tests/testthat/test_incidence_data_processing.R
tests/testthat/test_lambda_j_t.R
tests/testthat/test_model_selection.R
tests/testthat/test_spatial_processing.R
tests/testthat/test_util.R
todo.md
