melt_physeq: Melt phyloseq object
In antonioggsousa/micrUBIfuns: Set of functions for microbiome analyses
Description
Usage
Arguments
Value
View source: R/miscellaneous.R
Description
Given a phyloseq object with 'otu_table', 'tax_table', 'sam_data' (required)
it gives the data.frame melted with all the OTU/ASV (tidy), taxonomic and sample data.
Same functionality of the function 'psmelt()' from the 'phyloseq' R package, but
fastest as it uses 'data.table' R package for the task.
Usage
1
melt_physeq(physeq)
Arguments
physeq
phyloseq-class object with 'otu_table', 'tax_table', 'sam_data' slots (required).
Value
A data frame with with all the OTU/ASV (tidy), taxonomic and sample data. The same
output to as 'psmelt()' function (from 'phyloseq').
antonioggsousa/micrUBIfuns documentation built on Nov. 14, 2020, 1:40 a.m.
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Description Usage Arguments Value
View source: R/miscellaneous.R
Description
Given a phyloseq object with 'otu_table', 'tax_table', 'sam_data' (required) it gives the data.frame melted with all the OTU/ASV (tidy), taxonomic and sample data. Same functionality of the function 'psmelt()' from the 'phyloseq' R package, but fastest as it uses 'data.table' R package for the task.
Usage
1 | melt_physeq(physeq)
|
Arguments
physeq |
phyloseq-class object with 'otu_table', 'tax_table', 'sam_data' slots (required). |
Value
A data frame with with all the OTU/ASV (tidy), taxonomic and sample data. The same output to as 'psmelt()' function (from 'phyloseq').
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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