compress_clusters: Compress clusters of features to a single feature
In antonvsdata/amp: Smoothing Metabolomics Analyses
Description
Usage
Arguments
Value
See Also
Examples
View source: R/feature_clustering.R
Description
This function compresses clusters found by cluster_features, keeping only the feature with the highest
median peak area. The features that were discarded are recorded in the results part, under Cluster_features.
Usage
1
compress_clusters(object)
Arguments
object
a MetaboSet object
Value
a MetaboSet object with only one feature per cluster
See Also
Examples
1
2
clustered <- cluster_features(example_set, rt_window = 1, corr_thresh = 0.5, d_thresh = 0.6)
compressed <- compress_clusters(clustered)
antonvsdata/amp documentation built on Jan. 8, 2020, 3:15 a.m.
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Description Usage Arguments Value See Also Examples
View source: R/feature_clustering.R
Description
This function compresses clusters found by cluster_features, keeping only the feature with the highest median peak area. The features that were discarded are recorded in the results part, under Cluster_features.
Usage
1 | compress_clusters(object)
|
Arguments
object |
a MetaboSet object |
Value
a MetaboSet object with only one feature per cluster
See Also
Examples
1 2 | clustered <- cluster_features(example_set, rt_window = 1, corr_thresh = 0.5, d_thresh = 0.6)
compressed <- compress_clusters(clustered)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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