construct_MetaboSet: Construct MetaboSet objects

In antonvsdata/amp: Smoothing Metabolomics Analyses

Description

Construct MetaboSet objects from input read by read_from_excel. Returns a list of MetaboSet objects, one per mode. The modes are separated by the "Split" column in feature_data.

Usage

construct_MetaboSet(exprs, pheno_data, feature_data,
  group_col = NA_character_, time_col = NA_character_,
  subject_col = NA_character_)

Arguments

exprs	matrix, the feature abundances, size features x samples
pheno_data	data frame, sample information, size sample info variables x samples
feature_data	data frame, information about the features, size features x feature info columns
group_col	character, the name of the column in pheno_data to use as the grouping variable
time_col	character, the name of the column in pheno_data to use as the time variable
subject_col	character, the name of the column in pheno_data to use as the subject ID variable

Value

list of MetaboSet objects

See Also

read_from_excel

antonvsdata/amp documentation built on Jan. 8, 2020, 3:15 a.m.