mixomics_plsda: PLS-DA

In antonvsdata/amp: Smoothing Metabolomics Analyses

Description

A simple wrapper for fitting a PLS-DA model using plsda function of the mixOmics package. The object can then be passed to many of the mixOmics functions for prediction, performance evaluation etc. To run initial optimization for a PLS-DA model, try mixomics_plsda_optimize.

Usage

mixomics_plsda(object, y, ...)

Arguments

object	a MetaboSet object
y	character, column name of the grouping variable to predict
...	any parameters passed to mixOmics::plsda

Value

an object of class "plsdsa"

Examples

plsda_res <- mixomics_plsda(merged_sample, y = "Group")

antonvsdata/amp documentation built on Jan. 8, 2020, 3:15 a.m.