drop_flagged: Drop flagged features

In antonvsdata/amp: Smoothing Metabolomics Analyses

Description

Removes all features that have been flagged by quality control functions. Only features that do not have a flag (Flag == NA) are retained.

Usage

drop_flagged(object, all_features = FALSE)

Arguments

object	a MetaboSet object
all_features	logical, should all features be retained? Mainly used by internal functions

Examples

dim(merged_sample)
flagged <- flag_quality(merged_sample)
noflags <- drop_flagged(flagged)
dim(noflags)

antonvsdata/amp documentation built on Jan. 8, 2020, 3:15 a.m.