classify_by_adjusted_pvalue: Infer homology inference based on an adjusted p-value...
In arendsee/phylostratr: Analyze phylostratigraphic data
classify_by_adjusted_pvalue R Documentation
Infer homology inference based on an adjusted p-value threshold
Description
Here the E-values of sequence similarity against each target species is
multiplied by the total number of target species. This is equivalent to what
BLAST does in the special case where all proteomes are of equal length.
Usage
classify_by_adjusted_pvalue(threshold, ...)
Arguments
threshold
An e-value threshold (before adjustment)
...
Unused
Value
A function of a dataframe with columns 'evalue' and 'staxid'
arendsee/phylostratr documentation built on Dec. 31, 2022, 10:22 a.m.
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| classify_by_adjusted_pvalue | R Documentation |
Infer homology inference based on an adjusted p-value threshold
Description
Here the E-values of sequence similarity against each target species is multiplied by the total number of target species. This is equivalent to what BLAST does in the special case where all proteomes are of equal length.
Usage
classify_by_adjusted_pvalue(threshold, ...)
Arguments
threshold |
An e-value threshold (before adjustment) |
... |
Unused |
Value
A function of a dataframe with columns 'evalue' and 'staxid'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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