extract_uniprot_id_from_fasta: Parse a UniProt ID from a FASTA file
In arendsee/phylostratr: Analyze phylostratigraphic data
View source: R/uniprot-access.R
extract_uniprot_id_from_fasta R Documentation
Parse a UniProt ID from a FASTA file
Description
UniProt FASTA files have the initial pattern:
<db>|<UniProt ID>|<alternative ID> <desc>'
Usage
extract_uniprot_id_from_fasta(fastafile)
Arguments
fastafile
A protein FASTA file, assumed to be UniProt format
Details
Here we parse out the UniProt ID. If the FASTA header does not match the
pattern, we return NULL
Value
character vector of UniProt IDs IF this is a UniProt FASTA, NULL otherwise
arendsee/phylostratr documentation built on Dec. 31, 2022, 10:22 a.m.
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View source: R/uniprot-access.R
| extract_uniprot_id_from_fasta | R Documentation |
Parse a UniProt ID from a FASTA file
Description
UniProt FASTA files have the initial pattern: <db>|<UniProt ID>|<alternative ID> <desc>'
Usage
extract_uniprot_id_from_fasta(fastafile)
Arguments
fastafile |
A protein FASTA file, assumed to be UniProt format |
Details
Here we parse out the UniProt ID. If the FASTA header does not match the pattern, we return NULL
Value
character vector of UniProt IDs IF this is a UniProt FASTA, NULL otherwise
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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