ALRAChooseKPlot: ALRA Approximate Rank Selection Plot
In atakanekiz/Seurat3.0: Tools for Single Cell Genomics
Description
Usage
Arguments
Value
Author(s)
See Also
Description
Plots the results of the approximate rank selection process for ALRA.
Usage
1
ALRAChooseKPlot(object, start = 0, combine = TRUE)
Arguments
object
Seurat object
start
Index to start plotting singular value spacings from.
The transition from "signal" to "noise" in the is hard to see because the
first singular value spacings are so large. Nicer visualizations result from
skipping the first few. If set to 0 (default) starts from k/2.
combine
Combine plots into a single gg object; note that if TRUE,
themeing will not work when plotting multiple features
Value
A list of 3 ggplot objects splotting the singular values, the
spacings of the singular values, and the p-values of the singular values.
Author(s)
Jun Zhao, George Linderman
See Also
atakanekiz/Seurat3.0 documentation built on May 26, 2019, 2:33 a.m.
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Description Usage Arguments Value Author(s) See Also
Description
Plots the results of the approximate rank selection process for ALRA.
Usage
1 | ALRAChooseKPlot(object, start = 0, combine = TRUE)
|
Arguments
object |
Seurat object |
start |
Index to start plotting singular value spacings from. The transition from "signal" to "noise" in the is hard to see because the first singular value spacings are so large. Nicer visualizations result from skipping the first few. If set to 0 (default) starts from k/2. |
combine |
Combine plots into a single gg object; note that if TRUE, themeing will not work when plotting multiple features |
Value
A list of 3 ggplot objects splotting the singular values, the spacings of the singular values, and the p-values of the singular values.
Author(s)
Jun Zhao, George Linderman
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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