AnchorSet-class: The AnchorSet Class

In atakanekiz/Seurat3.0: Tools for Single Cell Genomics

Description

The AnchorSet class is an intermediate data storage class that stores the anchors and other related information needed for performing downstream analyses - namely data integration (IntegrateData) and data transfer (TransferData).

Slots

object.list

List of objects used to create anchors

reference.cells

List of cell names in the reference dataset - needed when performing data transfer.

query.cells

List of cell names in the query dataset - needed when performing data transfer

anchors

The anchor matrix. This contains the cell indices of both anchor pair cells, the anchor score, and the index of the original dataset in the object.list for cell1 and cell2 of the anchor.

offsets

The offsets used to enable cell look up in downstream functions

anchor.features

The features used when performing anchor finding.

atakanekiz/Seurat3.0 documentation built on May 26, 2019, 2:33 a.m.