Description Usage Arguments Examples
Create a DimReduc object
1 2 3 4 |
embeddings |
A matrix with the cell embeddings |
loadings |
A matrix with the feature loadings |
projected |
A matrix with the projected feature loadings |
assay |
Assay used to calculate this dimensional reduction |
stdev |
Standard deviation (if applicable) for the dimensional reduction |
key |
A character string to facilitate looking up features from a specific DimReduc |
jackstraw |
Results from the JackStraw function |
misc |
list for the user to store any additional information associated with the dimensional reduction |
1 2 3 4 | data <- GetAssayData(pbmc_small[["RNA"]], slot = "scale.data")
pcs <- prcomp(x = data)
pca.dr <- CreateDimReducObject(embeddings = pcs$rotation, loadings = pcs$x,
stdev = pcs$sdev, key = "PC", assay = "RNA")
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