athchen/beer: Bayesian Enrichment Estimation in R
BEER implements a Bayesian model for analyzing phage-immunoprecipitation sequencing (PhIP-seq) data. Given a PhIPData object, BEER returns posterior probabilities of enriched antibody responses, point estimates for the relative fold-change in comparison to negative control samples, and more. Additionally, BEER provides a convenient implementation for using edgeR to identify enriched antibody responses.
Getting started
Browse package contents
Package details |
|
|---|---|
| Bioconductor views | Bayesian Coverage Sequencing Software StatisticalMethod |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.1.4 |
| URL | https://github.com/athchen/beer/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
