summarizeRunOne: Derive point estimates for c, pi, phi, and Z for a particular...

In athchen/beer: Bayesian Enrichment Estimation in R

Derive point estimates for c, pi, phi, and Z for a particular sample

Description

Posterior means are used as point estimates for c, π, φ, and Z. As super-enriched peptides are tossed out before MCMC sampling, super-enriched peptides return NA for the φ and Z point estimates. Indices corresponding to a particular peptide in the MCMC sampler are mapped back to the original peptide names.

Usage

summarizeRunOne(object, file, se.matrix, burn.in = 0, post.thin = 1)

Arguments

object	a PhIPData object
file	path to rds file
se.matrix	logical matrix indicating which peptides were identified as super-enriched peptides
burn.in	number of iterations to be burned
post.thin	thinning parameter

Value

list of point estimates for c, pi, phi and Z

athchen/beer documentation built on July 2, 2022, 10:35 p.m.