getBF: Calculate Bayes Factors

In athchen/beer: Bayesian Enrichment Estimation in R

Calculate Bayes Factors

Description

Calculate Bayes Factors

Usage

getBF(
  object,
  assay.postprob = "prob",
  assay.name = "bayes_factors",
  prior.params = list(a_pi = 2, b_pi = 300)
)

Arguments

object	PhIPData object
assay.postprob	string indicating the assay where posterior probabilities are stored.
assay.name	name indicating where the results should be stored in the PhIPData object
prior.params	prior parameters for the probability of enrichment (a_pi, b_pi)

Value

PhIPData object with the results stored in the location specified by assay.name.

Examples

sim_data <- readRDS(system.file("extdata", "sim_data.rds", package = "beer"))

## Calculate Bayes Factors
getBF(sim_data, "prob", "bayes_factor")

athchen/beer documentation built on July 2, 2022, 10:35 p.m.