Dose Response for Omics

bmdboot | Computation of confidence interval on benchmark doses by... |

bmdcalc | Computation of benchmark doses for responsive items |

bmdfilter | Filtering BMDs according to estimation quality |

bmdplot | BMD plot optionally with confidence intervals on BMD |

bmdplotwithgradient | BMD plot with color gradient |

continuousanchoringdata | Import and check of continuous anchoring apical data |

curvesplot | Plot of fitted curves |

drcfit | Dose response modelling for responsive items |

ecdfplotwithCI | ECDF plot of a variable with given confidence intervals on... |

ecdfquantileplot | ECDF plot of a given quantile of a variable calculated by... |

formatdata4DRomics | Build an R object that can be used as data input in DRomics |

itemselect | Selection of significantly responsive items |

metabolomicdata | Import and check of continuous omic data (e.g. metabolomic... |

microarraydata | Import, check and normalization of single-channel microarray... |

PCAdataplot | Performs and plots the results of a PCA on omic data |

RNAseqdata | Import, check and normalization and transformation of RNAseq... |

Scenedesmus | Concentration-response effect of triclosan in Scenedesmus... |

selectgroups | Selection of groups on which to focus |

sensitivityplot | Plot of a summary of BMD values per group of items |

targetplot | Dose-reponse plot for target items |

trendplot | Plot of the repartition of trends per group |

zebraf | Transcriptomic dose-response to ionizing radiation in... |

Zhou | Dose-response kidney transcriptomic effect of... |

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