edgeData_keggPathwaygraphs: utils: utility functions names in which there is an edge...
In azampvd/DrugDiseaseNet: A Systems Biology Approach for Drug Repurposing
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
utils: utility functions
names in which there is an edge between the given nodes
Usage
1
edgeData_keggPathwaygraphs(edgeFrom, edgeTo, updateKEGG = FALSE)
Arguments
edgeFrom
A character of node name
edgeTo
A character of node name
updateKEGG
re-download KEGG data
Details
#' Draghici S., et.al.: "A systems biology approach for
pathway level analysis". Genome Research, 17, 2007.
Value
A character vector of KEGG pathway names in which
edge (edgeFrom, edgeTo) exists
Author(s)
Azam Peyvandipour and Sorin Draghici
See Also
keggPathwayGraphs,keggPathwayNames
Examples
1
2
3
4
pathways<-edgeData_keggPathwaygraphs(edgeFrom="hsa:208",
edgeTo="hsa:2309",updateKEGG=FALSE)
class(pathways)
head(pathways)
azampvd/DrugDiseaseNet documentation built on May 7, 2019, 8:58 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
utils: utility functions names in which there is an edge between the given nodes
Usage
1 | edgeData_keggPathwaygraphs(edgeFrom, edgeTo, updateKEGG = FALSE)
|
Arguments
edgeFrom |
A character of node name |
edgeTo |
A character of node name |
updateKEGG |
re-download KEGG data |
Details
#' Draghici S., et.al.: "A systems biology approach for pathway level analysis". Genome Research, 17, 2007.
Value
A character vector of KEGG pathway names in which edge (edgeFrom, edgeTo) exists
Author(s)
Azam Peyvandipour and Sorin Draghici
See Also
keggPathwayGraphs,keggPathwayNames
Examples
1 2 3 4 | pathways<-edgeData_keggPathwaygraphs(edgeFrom="hsa:208",
edgeTo="hsa:2309",updateKEGG=FALSE)
class(pathways)
head(pathways)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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