keggGlobalGraph: keggGlobalGraph: Construct global graph of KEGG pathways.
In azampvd/DrugDiseaseNet: A Systems Biology Approach for Drug Repurposing
Description
Usage
Arguments
Value
Author(s)
References
See Also
Examples
Description
keggGlobalGraph: Construct global graph of KEGG pathways.
Usage
1
keggGlobalGraph(organism = "hsa", updateKEGG = FALSE)
Arguments
organism
organism code as defined by KEGG
updateKEGG
re-download KEGG data
Value
An object of class graphNEL encoding the KEGG
global graph information.
Author(s)
Azam Peyvandipour and Sorin Draghici
References
#' Draghici S., et.al.: "A systems biology approach for
pathway level analysis". Genome Research, 17, 2007.
See Also
keggPathwayGraphs,
keggPathwayNames
Examples
1
2
3
4
5
6
7
library(graph)
gg<-keggGlobalGraph()
class(gg)
head(nodes(gg))
class(edges(gg))
allEdges<-edges(gg)
allEdges$`hsa:2065`
azampvd/DrugDiseaseNet documentation built on May 7, 2019, 8:58 p.m.
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Description Usage Arguments Value Author(s) References See Also Examples
Description
keggGlobalGraph: Construct global graph of KEGG pathways.
Usage
1 | keggGlobalGraph(organism = "hsa", updateKEGG = FALSE)
|
Arguments
organism |
organism code as defined by KEGG |
updateKEGG |
re-download KEGG data |
Value
An object of class graphNEL encoding the KEGG
global graph information.
Author(s)
Azam Peyvandipour and Sorin Draghici
References
#' Draghici S., et.al.: "A systems biology approach for pathway level analysis". Genome Research, 17, 2007.
See Also
keggPathwayGraphs,
keggPathwayNames
Examples
1 2 3 4 5 6 7 | library(graph)
gg<-keggGlobalGraph()
class(gg)
head(nodes(gg))
class(edges(gg))
allEdges<-edges(gg)
allEdges$`hsa:2065`
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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