keggGlobalGraph: keggGlobalGraph: Construct global graph of KEGG pathways.

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/keggGlobalGraph.R

Description

keggGlobalGraph: Construct global graph of KEGG pathways.

Usage

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keggGlobalGraph(organism = "hsa", updateKEGG = FALSE)

Arguments

organism

organism code as defined by KEGG

updateKEGG

re-download KEGG data

Value

An object of class graphNEL encoding the KEGG global graph information.

Author(s)

Azam Peyvandipour and Sorin Draghici

References

#' Draghici S., et.al.: "A systems biology approach for pathway level analysis". Genome Research, 17, 2007.

See Also

keggPathwayGraphs, keggPathwayNames

Examples

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library(graph)
gg<-keggGlobalGraph()
class(gg)
head(nodes(gg))
class(edges(gg))
allEdges<-edges(gg)
allEdges$`hsa:2065`

azampvd/DrugDiseaseNet documentation built on Oct. 18, 2017, 6:14 p.m.