Man pages for bachisiozic/mmsig
A Mutational Signature Fitting Tool for Hematological Cancers
| bootSigsPlot | Plot signature contributions with 95 % CI |
| bootstrap_fit_signatures | Bootstrapping function for mmsig |
| em_signatures | Expectation maximization algorithm to estimate the signature... |
| fit_signatures | Signature fitting function for mmsig |
| getStrandBias | Statistical tests for transcriptional strand bias |
| mm_5_col | Example data in 5-columns format |
| mm_96_classes | Example data in 96 classes format |
| mm_fit_signatures | Mutational signature fitting with mmsig |
| plot_signatures | Plotting function for mmsig package |
| refCheck | Check if the input mutation catalog is aligned to the correct... |
| signature_ref | Mutational signature reference |
| spat | Print message and variable |
| spit | Print message |
| vcfCleaner | Clean input VCF-like file |
