fit_signatures: Signature fitting function for mmsig

Description Usage Arguments Value

View source: R/fit_signatures.R

Description

Signature fitting function for mmsig

Usage

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fit_signatures(
  samples.muts,
  consigts.defn,
  sigt.profs,
  cos_sim_threshold,
  force_include,
  dbg = dbg
)

Arguments

samples.muts

96 classes mutational profile for all samples

consigts.defn

96 classes mutational profile for mutational signature reference

sigt.profs

which signatures to fit for each sample

cos_sim_threshold

cosine similarity threshold to remove signatures

force_include

vector with the names of signatures to always keep in the final profile of every sample

dbg

boolean whether to print or not

Value

estimated mutational signature profile of all samples


bachisiozic/mmsig documentation built on Feb. 16, 2021, 12:03 a.m.