notes/indexing/eigen.md

In bbolker/McMasterPandemic: Pandemic Model

non-vax case

• pass params -- are they modified?
• do_hazard is FALSE by default

• state is coming in NULL

• set N = 1

• call make_state with N = 1 and E0 = 1e-05, use_eigvec = FALSE
• Inside make_state
• initialize state to the basic set of variables "S" "E" "Ia" "Ip" "Im" "Is" "H" "H2" "ICUs" "ICUd" "D" "R" all set to zero
• Set all E states to E0
• Set all S states to N - sum(E0), which I think really is just N - E0
• Return state
• Make the ratemat with this state
• call run_sim_range with do_exponential = TRUE and testwt_scale = "none"
• Inside run_sim_range
• Initialize foi columns to NA
• Initialize res matrix to NA
• Loop over iterations
  • Call do_step
  • Inside do_step
  • outflow[S_states] = rowSums(flows[S_pos, S_pos])
  • outflow[non_S_states] = rowSums(flows[notS_pos, p_states])

bbolker/McMasterPandemic documentation built on Aug. 25, 2024, 6:35 p.m.