What do we need to do to reduce MacPan
at this point you will have a SEI^2R model ... you can't quite make this identical to SIR because you need the rates of E -> I and I1 -> I2 to become large which screws things up ... it might be easier to implement an SEI^2R model in TMB!
turn off any cleverness about using the eigenvector to establish initial conditions, just hand it an explicit starting vector
Ali worked on this ... where is it??
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