expand_state_vax: expand state vector by vaccination status

In bbolker/McMasterPandemic: Pandemic Model

expand state vector by vaccination status

Description

by default, everyone starts with an unvaccinated status

Usage

expand_state_vax(x, model_type = c("onedose", "twodose"), unif = FALSE)

Arguments

x	state vector
model_type	choose either the one-dose or the two-dose model
unif	should individuals in each epidemic category be distributed evenly among vaccination strata? (if FALSE, put everyone in the first vaccination category, i.e., the unvaccinated category)

See Also

Other classic_macpan: add_d_log(), add_updated_vaxrate(), aggregate_agecats(), calibrate_comb(), calibrate(), check_age_cat_compatibility(), check_contact_rate_setting(), col_multiply(), condense_age(), condense_params_vax(), condense_state(), condense_vax(), dev_is_tikz(), do_step(), expand_params_age(), expand_params_desc_age(), expand_params_desc_variant(), expand_params_desc_vax(), expand_params_mistry(), expand_params_variant(), expand_params_vax(), expand_state_age(), expand_stateval_testing(), fix_pars(), fix_stored(), forecast_ensemble(), forecast_sim(), getData(), get_GI_moments(), get_Gbar(), get_R0(), get_doses_per_day(), get_evec(), get_kernel_moments(), get_opt_pars(), get_r(), invlink_trans(), make_betavec(), make_beta(), make_jac(), make_ratemat(), make_state(), make_test_wtsvec(), make_vaxrate(), mk_Nvec(), mk_agecats(), mk_contact_rate_setting(), mk_mistry_Nvec(), mk_pmat(), mk_vaxcats(), mle_fun(), non_expanded_states, rExp(), read_params(), repair_names_age(), restore(), run_sim_ageify(), run_sim_break(), run_sim_loglin(), run_sim_mobility(), run_sim_range(), run_sim(), show_ratemat(), testify(), texify(), trans_state_vars(), update_contact_rate_setting(), update_foi(), update_params_mistry(), vis_model(), write_params()

Examples

params <- read_params("PHAC.csv")
ss <- make_state(params=params)
ss2 <- expand_state_vax(ss)

bbolker/McMasterPandemic documentation built on Aug. 25, 2024, 6:35 p.m.