fix_pars: adjust pars to match targets

In bbolker/McMasterPandemic: Pandemic Model

adjust pars to match targets

Description

adjust pars to match targets

Usage

fix_pars(
  params,
  target = c(r = 0.23, Gbar = 6),
  pars_adj = list("beta0", c("sigma", "gamma_s", "gamma_m", "gamma_a")),
  r_method = c("expsim", "rmult"),
  u_interval = c(-3, 3),
  debug = FALSE
)

Arguments

params	a parameter vector
target	target values for one or more epidemic moments
pars_adj	list of sets of parameters to adjust
r_method	method for fixing r (brute-force exponential simulation or JD's kernel-based approach?)
u_interval	interval for uniroot adjustment
debug	debug?

See Also

Other classic_macpan: add_d_log(), add_updated_vaxrate(), aggregate_agecats(), calibrate_comb(), calibrate(), check_age_cat_compatibility(), check_contact_rate_setting(), col_multiply(), condense_age(), condense_params_vax(), condense_state(), condense_vax(), dev_is_tikz(), do_step(), expand_params_age(), expand_params_desc_age(), expand_params_desc_variant(), expand_params_desc_vax(), expand_params_mistry(), expand_params_variant(), expand_params_vax(), expand_state_age(), expand_state_vax(), expand_stateval_testing(), fix_stored(), forecast_ensemble(), forecast_sim(), getData(), get_GI_moments(), get_Gbar(), get_R0(), get_doses_per_day(), get_evec(), get_kernel_moments(), get_opt_pars(), get_r(), invlink_trans(), make_betavec(), make_beta(), make_jac(), make_ratemat(), make_state(), make_test_wtsvec(), make_vaxrate(), mk_Nvec(), mk_agecats(), mk_contact_rate_setting(), mk_mistry_Nvec(), mk_pmat(), mk_vaxcats(), mle_fun(), non_expanded_states, rExp(), read_params(), repair_names_age(), restore(), run_sim_ageify(), run_sim_break(), run_sim_loglin(), run_sim_mobility(), run_sim_range(), run_sim(), show_ratemat(), testify(), texify(), trans_state_vars(), update_contact_rate_setting(), update_foi(), update_params_mistry(), vis_model(), write_params()

Examples

pp <- read_params("ICU1.csv")
summary(pp)
pp2 <- fix_pars(pp,debug=TRUE)
summary(pp2)

bbolker/McMasterPandemic documentation built on Aug. 25, 2024, 6:35 p.m.