run_sim_ageify: Ageify a basic simulation

In bbolker/McMasterPandemic: Pandemic Model

Ageify a basic simulation

Description

Wrapper function for 'run_sim()' that incorporates existing ageify tools

Usage

run_sim_ageify(
  base_params,
  base_state,
  age_cat = mk_agecats(),
  beta0 = NULL,
  pmat = mk_pmat(),
  Nvec = mk_Nvec(),
  ...
)

Arguments

base_params	base parameter set without age structure (e.g. generated by 'read_params()')
base_state	base state vector without age structure (e.g. generated by 'make_state()')
age_cat	age categories (e.g. generated by 'mk_agecats()')
beta0	vector of beta0 values for each age group
pmat	contact matrix (e.g. generated by 'mk_pmat()')
Nvec	population distribution (e.g. generated by 'mk_Nvec()')
...	additional arguments to 'run_sim()'

Value

simulation results (an object of class 'pansim')

See Also

Other classic_macpan: add_d_log(), add_updated_vaxrate(), aggregate_agecats(), calibrate_comb(), calibrate(), check_age_cat_compatibility(), check_contact_rate_setting(), col_multiply(), condense_age(), condense_params_vax(), condense_state(), condense_vax(), dev_is_tikz(), do_step(), expand_params_age(), expand_params_desc_age(), expand_params_desc_variant(), expand_params_desc_vax(), expand_params_mistry(), expand_params_variant(), expand_params_vax(), expand_state_age(), expand_state_vax(), expand_stateval_testing(), fix_pars(), fix_stored(), forecast_ensemble(), forecast_sim(), getData(), get_GI_moments(), get_Gbar(), get_R0(), get_doses_per_day(), get_evec(), get_kernel_moments(), get_opt_pars(), get_r(), invlink_trans(), make_betavec(), make_beta(), make_jac(), make_ratemat(), make_state(), make_test_wtsvec(), make_vaxrate(), mk_Nvec(), mk_agecats(), mk_contact_rate_setting(), mk_mistry_Nvec(), mk_pmat(), mk_vaxcats(), mle_fun(), non_expanded_states, rExp(), read_params(), repair_names_age(), restore(), run_sim_break(), run_sim_loglin(), run_sim_mobility(), run_sim_range(), run_sim(), show_ratemat(), testify(), texify(), trans_state_vars(), update_contact_rate_setting(), update_foi(), update_params_mistry(), vis_model(), write_params()

Examples

params <- update(read_params("PHAC_testify.csv"), testing_intensity=0)
state <- make_state(params=params)
run_sim_ageify(base_params = params, base_state = state)

bbolker/McMasterPandemic documentation built on Aug. 25, 2024, 6:35 p.m.