loglik2.C: likelihood calculation, in C

In bbolker/mixstock: Functions for Mixed Stock Analysis

likelihood calculation, in C

Description

takes a parameter vector corresponding to the (possibly transformed) source contributions and source marker frequencies and returns the negative log likelihood

Usage

loglik2.C(p, sourcesamp, mixsamp = NULL, verbose = FALSE,
transf = c("full", "part", "none"), full = FALSE, cond = FALSE, debug = FALSE)

Arguments

p	parameter vector
sourcesamp	source marker samples
mixsamp	mixed stock samples
verbose	verbose output?
transf	transformation: "full", "part", or "none"
full	full likelihood (including normalization constants?)
cond	conditional likelihood (not including source sample likelihood?
debug	debugging output?

Value

numeric value of the negative log-likelihood

bbolker/mixstock documentation built on July 23, 2024, 12:18 p.m.