plot.mixstock.est: plot mixed stock analysis estimates

In bbolker/mixstock: Functions for Mixed Stock Analysis

plot mixed stock analysis estimates

Description

plots a mixed stock analysis estimate as a point plot with 95% confidence limites

Usage

## S3 method for class 'mixstock.est'
plot(x, plot.freqs = FALSE,
   sourcectr=FALSE, contrib.lab = "Estimated source contributions",
   sourcefreq.lab = "Estimated source marker freqs",
   markcolors = rainbow(x$H),
   alength=0.25,
   aunits="inches",
   abbrev, level=0.95,
   axes=TRUE, ...)

Arguments

x	mixstock estimate
plot.freqs	plot marker frequency estimates?
sourcectr	plot source-centric estimates?
contrib.lab	label for source contribution plot
sourcefreq.lab	label for marker frequency plot
markcolors	colors corresponding to markers
alength	length of error bar ends in many-to-many plots
aunits	units of error bar end lengths in many-to-many plots
abbrev	abbreviate names on horizontal axis in many-to-many plots? Default if TRUE is 3 characters, but may also be an integer specifying the number of characters
level	confidence level
axes	(logical) plot axes?
...	other arguments to barplot

Value

Produces a plot on the current graphics device.

Note

The ... argument can contain a great number of optional arguments to barplot: see barplot and xyplot (in the lattice package). Among many others, one can specify (for example) scale=list(x=list(cex=0.6),y=list(log=TRUE)) for smaller labels on the horizontal axis and a log scale on the vertical axis; layout=c(3,5) to change the number of rows and columns of panels; or as.table=TRUE to change the ordering of the panel to top-to-bottom, left-to-right. (One can also use abbreviate=TRUE in the scale list, but the abbrev argument above seems to be more powerful.)

Examples

  data(simex)
  u1 = uml(simex)
  plot(u1)
  plot(u1,plot.freqs=TRUE)

bbolker/mixstock documentation built on July 23, 2024, 12:18 p.m.