mixstock.est: construct (or print) a mixed stock analysis estimate object

In bbolker/mixstock: Functions for Mixed Stock Analysis

construct (or print) a mixed stock analysis estimate object

Description

combine a variety of data into a list with class "mixstock.est"

Usage

mixstock.est(fit, resample = NULL,
resample.index=NULL, data = NULL, em = FALSE, sourcesamp =
NULL, mixsamp = NULL, R = NULL, H = NULL, M=1, transf = "full", method =
"unknown", boot.method = "none", boot.data = NULL, GR = NULL, prior =
NULL)
## S3 method for class 'mixstock.est'
print(x,debug=FALSE,...)
## S3 method for class 'mixstock.est'
xyplot(x,data,...)
## S3 method for class 'mixstock.est'
coeftab(object,clevel=c(0.5,0.95),...)

Arguments

fit	a mixed stock fit (from cml, uml, etc.)
object	a mixed stock fit
resample	resampling information
resample.index	chain index for resamples
data	original data (ignored in call to xyplot)
em	(logical) was estimation done by EM algorithm?
sourcesamp	source marker samples
mixsamp	mixed stock samples
R	number of sources
H	number of markers
M	number of mixed stocks
transf	transformation of parameters
method	estimation method (cml,uml,mcmc)
boot.method	bootstrap method – nonpar, parametric, or mcmc
boot.data	bootstrap data
GR	Gelman-Rubin diagnostic results
prior	prior strength
x	a mixstock.est object
debug	debug?
clevel	confidence regions to plot
...	other arguments

Value

an object of type mixstock.est

bbolker/mixstock documentation built on July 23, 2024, 12:18 p.m.