Files in bbuchsbaum/neurosurf
Data structures and visualization for surface-based neuroimaging data

.Rbuildignore
.cursor/rules/roxygendocs.mdc
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/Arith.R R/IO.R R/ROI.R R/Searchlight.R R/all_class.R R/all_generic.R R/boundaries.R R/curv.R R/geometry.R R/neighborhood.R R/neuro_surface.R R/neurosurf.R R/spec.R R/surfwidget.R R/view_surface.R R/vol_to_surf.R README.Rmd README.md
_pkgdown.yml
codecov.yml
docs/404.html
docs/articles/displaying-surfaces.html
docs/articles/displaying-surfaces_files/CanvasMatrix4-2016/CanvasMatrix.src.js
docs/articles/displaying-surfaces_files/crosstalk-1.0.0/css/crosstalk.css
docs/articles/displaying-surfaces_files/crosstalk-1.0.0/js/crosstalk.js
docs/articles/displaying-surfaces_files/crosstalk-1.0.0/js/crosstalk.js.map
docs/articles/displaying-surfaces_files/crosstalk-1.0.0/js/crosstalk.min.js
docs/articles/displaying-surfaces_files/crosstalk-1.0.0/js/crosstalk.min.js.map
docs/articles/displaying-surfaces_files/htmlwidgets-1.5/htmlwidgets.js
docs/articles/displaying-surfaces_files/jquery-1.11.3/jquery-AUTHORS.txt
docs/articles/displaying-surfaces_files/jquery-1.11.3/jquery.js
docs/articles/displaying-surfaces_files/jquery-1.11.3/jquery.min.js
docs/articles/displaying-surfaces_files/jquery-1.11.3/jquery.min.map
docs/articles/displaying-surfaces_files/rglWebGL-binding-0.100.30/rglWebGL.js
docs/articles/displaying-surfaces_files/rglwidgetClass-2/rgl.css
docs/articles/displaying-surfaces_files/rglwidgetClass-2/rglClass.src.js
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/AFNISurfaceFileDescriptor-class.html
docs/reference/BilatNeuroSurfaceVector-class.html
docs/reference/FreeSurferSurfaceGeometryMetaInfo-class.html
docs/reference/FreesurferAsciiSurfaceFileDescriptor-class.html
docs/reference/FreesurferBinarySurfaceFileDescriptor-class.html
docs/reference/FreesurferSurfaceGeometryMetaInfo.html
docs/reference/LabeledNeuroSurface-class.html
docs/reference/NIMLSurfaceDataMetaInfo-class.html
docs/reference/NIMLSurfaceDataMetaInfo.html
docs/reference/NIMLSurfaceDataMetaInfoFromAFNI.html
docs/reference/NIMLSurfaceFileDescriptor-class.html
docs/reference/NeuroSurface-class.html
docs/reference/NeuroSurface.html
docs/reference/NeuroSurfaceSource-class.html
docs/reference/NeuroSurfaceVector-class.html
docs/reference/NeuroSurfaceVector.html
docs/reference/NeuroSurfaceVectorSource-class.html
docs/reference/ROISurface-class.html
docs/reference/ROISurface.html
docs/reference/ROISurfaceVector-class.html
docs/reference/ROISurfaceVector.html
docs/reference/RandomSurfaceSearchlight.html
docs/reference/SurfaceDataMetaInfo-class.html
docs/reference/SurfaceDataMetaInfo.html
docs/reference/SurfaceDisk.html
docs/reference/SurfaceGeometry-class.html
docs/reference/SurfaceGeometryMetaInfo-class.html
docs/reference/SurfaceGeometrySource-class.html
docs/reference/SurfaceSearchlight.html
docs/reference/VertexData-class.html
docs/reference/adjacency-methods.html
docs/reference/adjacency.html
docs/reference/alpha_channel.html
docs/reference/as-methods.html
docs/reference/as.matrix-methods.html
docs/reference/as.vector-NeuroSurface-method.html
docs/reference/blend_colors.html
docs/reference/cluster_threshold-methods.html
docs/reference/cluster_threshold.html
docs/reference/color-conversion.html
docs/reference/conn_comp-NeuroSurfaceVector-method.html
docs/reference/conn_comp-methods.html
docs/reference/coords-methods.html
docs/reference/curv_cols.html
docs/reference/curvature-methods.html
docs/reference/curvature.html
docs/reference/data_reader-methods.html
docs/reference/geometry-methods.html
docs/reference/graph-methods.html
docs/reference/graph.html
docs/reference/hello.html
docs/reference/index.html
docs/reference/indices-methods.html
docs/reference/laplacian-methods.html
docs/reference/laplacian.html
docs/reference/left-methods.html
docs/reference/left.html
docs/reference/length-methods.html
docs/reference/loadFSSurface.html
docs/reference/load_data-methods.html
docs/reference/map_colors.html
docs/reference/map_values-methods.html
docs/reference/meshToGraph.html
docs/reference/neighbor_graph-methods.html
docs/reference/neighbor_graph.html
docs/reference/neurosurf.html
docs/reference/nodes-methods.html
docs/reference/nodes.html
docs/reference/plot-methods.html
docs/reference/readAFNISurfaceHeader.html
docs/reference/readFreesurferAsciiGeometry.html
docs/reference/readFreesurferAsciiHeader.html
docs/reference/readFreesurferBinaryGeometry.html
docs/reference/readFreesurferBinaryHeader.html
docs/reference/readNIMLSurfaceHeader.html
docs/reference/read_freesurfer_annot.html
docs/reference/read_meta_info-methods.html
docs/reference/read_surf.html
docs/reference/read_surf_data.html
docs/reference/read_surf_data_seq.html
docs/reference/read_surf_geometry.html
docs/reference/right.html
docs/reference/series-methods.html
docs/reference/show-NeuroSurface-method.html
docs/reference/show-NeuroSurfaceVector-method.html
docs/reference/show-ROISurface-method.html
docs/reference/show-SurfaceDataMetaInfo-method.html
docs/reference/show-SurfaceGeometry-method.html
docs/reference/show-SurfaceGeometryMetaInfo-method.html
docs/reference/smooth-methods.html
docs/reference/sub-NeuroSurfaceVector-missing-missing-ANY-method.html
docs/reference/sub-NeuroSurfaceVector-missing-numeric-ANY-method.html
docs/reference/sub-NeuroSurfaceVector-numeric-missing-ANY-method.html
docs/reference/sub-NeuroSurfaceVector-numeric-numeric-ANY-method.html
docs/reference/sub-sub-NeuroSurfaceVector-numeric-method.html
docs/reference/surf_subset-methods.html
docs/reference/values-methods.html
docs/reference/vertices-methods.html
docs/reference/vertices.html
docs/reference/vol_to_surf.html
docs/reference/write_surf_data.html
inst/extdata/.DS_Store
inst/extdata/Schaefer2018_200Parcels_7Networks_order_FSLMNI152_1mm.nii
inst/extdata/Schaefer2018_200Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
inst/extdata/fsSchaefer2018_200Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
inst/extdata/fsaverage_SurfVol+orig.BRIK.gz
inst/extdata/fsaverage_SurfVol+orig.HEAD.gz
inst/extdata/rscan01_lh.gii
inst/extdata/rscan01_lh.niml.dset
inst/extdata/rscan01_rh.niml.dset
inst/extdata/std.8_fsaverage_lh.MI.1D
inst/extdata/std.8_fsaverage_lh.spec
inst/extdata/std.8_fsaverage_rh.MI.1D
inst/extdata/std.8_fsaverage_rh.spec
inst/extdata/std.8_lh.inflated.asc
inst/extdata/std.8_lh.pial.asc
inst/extdata/std.8_lh.smoothwm.asc
inst/extdata/std.8_lh.sphere.asc
inst/extdata/std.8_lh.sphere.reg.asc
inst/extdata/std.8_lh.white.asc
inst/extdata/std.8_rh.inflated.asc
inst/extdata/std.8_rh.pial.asc
inst/extdata/std.8_rh.smoothwm.asc
inst/extdata/std.8_rh.sphere.asc
inst/extdata/std.8_rh.sphere.reg.asc
inst/extdata/std.8_rh.white.asc
inst/htmlwidgets/.DS_Store
inst/htmlwidgets/lib/neurosurface/neurosurface.js
inst/htmlwidgets/lib/neurosurface/neurosurface.min.js
inst/htmlwidgets/lib/three/OrbitControls.js
inst/htmlwidgets/lib/three/three.min.js
inst/htmlwidgets/neurosurface/.DS_Store
inst/htmlwidgets/neurosurface/.gitignore
inst/htmlwidgets/neurosurface/gulpfile.js
inst/htmlwidgets/neurosurface/package-lock.json
inst/htmlwidgets/neurosurface/package.json
inst/htmlwidgets/neurosurface/src/ColorMap.js
inst/htmlwidgets/neurosurface/src/EventEmitter.js
inst/htmlwidgets/neurosurface/src/NeuroSurfaceViewer.js
inst/htmlwidgets/neurosurface/src/classes.js
inst/htmlwidgets/neurosurface/src/debug.js
inst/htmlwidgets/neurosurface/src/index.js
inst/htmlwidgets/neurosurface/webpack.config.js
inst/htmlwidgets/surfwidget.css
inst/htmlwidgets/surfwidget.js
inst/htmlwidgets/surfwidget.yaml
man/AFNISurfaceFileDescriptor-class.Rd man/Arith-methods.Rd man/BilatNeuroSurfaceVector-class.Rd man/ColorMappedNeuroSurface-class.Rd man/ColorMappedNeuroSurface.Rd man/Compare-methods.Rd man/FreeSurferSurfaceGeometryMetaInfo-class.Rd man/FreesurferAsciiSurfaceFileDescriptor-class.Rd man/FreesurferBinarySurfaceFileDescriptor-class.Rd man/GIFTISurfaceDataMetaInfo-class.Rd man/GIFTISurfaceFileDescriptor-class.Rd man/GIFTISurfaceGeometryMetaInfo-class.Rd man/LabeledNeuroSurface-class.Rd man/NIMLSurfaceDataMetaInfo-class.Rd man/NIMLSurfaceFileDescriptor-class.Rd man/NeuroSurface-class.Rd man/NeuroSurface.Rd man/NeuroSurfaceSource-class.Rd man/NeuroSurfaceVector-class.Rd man/NeuroSurfaceVector.Rd man/NeuroSurfaceVectorSource-class.Rd man/ROISurface-class.Rd man/ROISurface.Rd man/ROISurfaceVector-class.Rd man/ROISurfaceVector.Rd man/RandomSurfaceSearchlight.Rd man/SurfaceDataMetaInfo-class.Rd man/SurfaceDisk.Rd man/SurfaceGeometry-class.Rd man/SurfaceGeometry.Rd man/SurfaceGeometryMetaInfo-class.Rd man/SurfaceGeometrySource-class.Rd man/SurfaceSearchlight.Rd man/VertexColoredNeuroSurface-class.Rd man/VertexData-class.Rd man/adjacency-methods.Rd man/as-methods.Rd man/as.matrix-methods.Rd man/as.vector-methods.Rd man/cluster_threshold-methods.Rd man/conn_comp-methods.Rd man/coords-methods.Rd man/curv_cols.Rd man/curvature-methods.Rd man/data_reader-methods.Rd man/findBoundaries-methods.Rd man/find_all_neighbors.Rd man/find_roi_boundaries.Rd man/geometry-methods.Rd man/graph-methods.Rd man/indices-methods.Rd man/laplacian-methods.Rd man/left-methods.Rd man/length-methods.Rd man/loadFSSurface.Rd man/load_data-methods.Rd man/meshToGraph.Rd man/neighbor_graph-methods.Rd man/neurosurf.Rd man/nodes-methods.Rd man/plot-methods.Rd man/plot_js-methods.Rd man/print.Searchlight.Rd man/projectCoordinates.Rd man/read_freesurfer_annot.Rd man/read_meta_info-methods.Rd man/read_meta_info.Rd man/read_surf.Rd man/read_surf_data.Rd man/read_surf_data_seq.Rd man/read_surf_geometry.Rd man/remeshSurface.Rd man/right-methods.Rd man/series-methods.Rd man/series_roi-methods.Rd man/show-methods.Rd man/smooth-NeuroSurface-method.Rd man/smooth-methods.Rd man/sub-NeuroSurfaceVector-missing-missing-ANY-method.Rd man/sub-NeuroSurfaceVector-missing-numeric-ANY-method.Rd man/sub-NeuroSurfaceVector-numeric-missing-ANY-method.Rd man/sub-NeuroSurfaceVector-numeric-numeric-ANY-method.Rd man/sub-ROISurface.Rd man/sub-sub-NeuroSurfaceVector-numeric-method.Rd man/surfwidget-SurfaceGeometry-method.Rd man/surfwidget-methods.Rd man/surfwidget-shiny.Rd man/updateAlpha.Rd man/updateColorMap.Rd man/updateIRange.Rd man/updateSurfwidgetConfig.Rd man/updateThreshold.Rd man/updateVertexColors.Rd man/values-methods.Rd man/vertices-methods.Rd man/view_surface.Rd man/vol_to_surf.Rd man/write_surf_data.Rd
neurosurf.Rproj
tests/testthat.R tests/testthat/test_boundaries_edge_faces.R tests/testthat/test_boundaries_methods.R tests/testthat/test_connections.R tests/testthat/test_data_reader.R tests/testthat/test_find_all_neighbors.R tests/testthat/test_io.R tests/testthat/test_neighborhood_spherical.R tests/testthat/test_searchlight.R tests/testthat/test_smoothing.R
tests/www/neurosurface.css
testshiny/test_shiny.R
vignettes/.gitignore
vignettes/displaying-surfaces.Rmd vignettes/introduction-to-neurosurf.Rmd
bbuchsbaum/neurosurf documentation built on June 10, 2025, 8:22 p.m.