Files in bbuchsbaum/neurosurf
Data structures and visualization for surface-based neuroimaging data
.Rbuildignore
.cursor/rules/roxygendocs.mdc
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/Arith.R
R/IO.R
R/ROI.R
R/Searchlight.R
R/all_class.R
R/all_generic.R
R/boundaries.R
R/curv.R
R/geometry.R
R/neighborhood.R
R/neuro_surface.R
R/neurosurf.R
R/spec.R
R/surfwidget.R
R/view_surface.R
R/vol_to_surf.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
docs/404.html
docs/articles/displaying-surfaces.html
docs/articles/displaying-surfaces_files/CanvasMatrix4-2016/CanvasMatrix.src.js
docs/articles/displaying-surfaces_files/crosstalk-1.0.0/css/crosstalk.css
docs/articles/displaying-surfaces_files/crosstalk-1.0.0/js/crosstalk.js
docs/articles/displaying-surfaces_files/crosstalk-1.0.0/js/crosstalk.js.map
docs/articles/displaying-surfaces_files/crosstalk-1.0.0/js/crosstalk.min.js
docs/articles/displaying-surfaces_files/crosstalk-1.0.0/js/crosstalk.min.js.map
docs/articles/displaying-surfaces_files/htmlwidgets-1.5/htmlwidgets.js
docs/articles/displaying-surfaces_files/jquery-1.11.3/jquery-AUTHORS.txt
docs/articles/displaying-surfaces_files/jquery-1.11.3/jquery.js
docs/articles/displaying-surfaces_files/jquery-1.11.3/jquery.min.js
docs/articles/displaying-surfaces_files/jquery-1.11.3/jquery.min.map
docs/articles/displaying-surfaces_files/rglWebGL-binding-0.100.30/rglWebGL.js
docs/articles/displaying-surfaces_files/rglwidgetClass-2/rgl.css
docs/articles/displaying-surfaces_files/rglwidgetClass-2/rglClass.src.js
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/AFNISurfaceFileDescriptor-class.html
docs/reference/BilatNeuroSurfaceVector-class.html
docs/reference/FreeSurferSurfaceGeometryMetaInfo-class.html
docs/reference/FreesurferAsciiSurfaceFileDescriptor-class.html
docs/reference/FreesurferBinarySurfaceFileDescriptor-class.html
docs/reference/FreesurferSurfaceGeometryMetaInfo.html
docs/reference/LabeledNeuroSurface-class.html
docs/reference/NIMLSurfaceDataMetaInfo-class.html
docs/reference/NIMLSurfaceDataMetaInfo.html
docs/reference/NIMLSurfaceDataMetaInfoFromAFNI.html
docs/reference/NIMLSurfaceFileDescriptor-class.html
docs/reference/NeuroSurface-class.html
docs/reference/NeuroSurface.html
docs/reference/NeuroSurfaceSource-class.html
docs/reference/NeuroSurfaceVector-class.html
docs/reference/NeuroSurfaceVector.html
docs/reference/NeuroSurfaceVectorSource-class.html
docs/reference/ROISurface-class.html
docs/reference/ROISurface.html
docs/reference/ROISurfaceVector-class.html
docs/reference/ROISurfaceVector.html
docs/reference/RandomSurfaceSearchlight.html
docs/reference/SurfaceDataMetaInfo-class.html
docs/reference/SurfaceDataMetaInfo.html
docs/reference/SurfaceDisk.html
docs/reference/SurfaceGeometry-class.html
docs/reference/SurfaceGeometryMetaInfo-class.html
docs/reference/SurfaceGeometrySource-class.html
docs/reference/SurfaceSearchlight.html
docs/reference/VertexData-class.html
docs/reference/adjacency-methods.html
docs/reference/adjacency.html
docs/reference/alpha_channel.html
docs/reference/as-methods.html
docs/reference/as.matrix-methods.html
docs/reference/as.vector-NeuroSurface-method.html
docs/reference/blend_colors.html
docs/reference/cluster_threshold-methods.html
docs/reference/cluster_threshold.html
docs/reference/color-conversion.html
docs/reference/conn_comp-NeuroSurfaceVector-method.html
docs/reference/conn_comp-methods.html
docs/reference/coords-methods.html
docs/reference/curv_cols.html
docs/reference/curvature-methods.html
docs/reference/curvature.html
docs/reference/data_reader-methods.html
docs/reference/geometry-methods.html
docs/reference/graph-methods.html
docs/reference/graph.html
docs/reference/hello.html
docs/reference/index.html
docs/reference/indices-methods.html
docs/reference/laplacian-methods.html
docs/reference/laplacian.html
docs/reference/left-methods.html
docs/reference/left.html
docs/reference/length-methods.html
docs/reference/loadFSSurface.html
docs/reference/load_data-methods.html
docs/reference/map_colors.html
docs/reference/map_values-methods.html
docs/reference/meshToGraph.html
docs/reference/neighbor_graph-methods.html
docs/reference/neighbor_graph.html
docs/reference/neurosurf.html
docs/reference/nodes-methods.html
docs/reference/nodes.html
docs/reference/plot-methods.html
docs/reference/readAFNISurfaceHeader.html
docs/reference/readFreesurferAsciiGeometry.html
docs/reference/readFreesurferAsciiHeader.html
docs/reference/readFreesurferBinaryGeometry.html
docs/reference/readFreesurferBinaryHeader.html
docs/reference/readNIMLSurfaceHeader.html
docs/reference/read_freesurfer_annot.html
docs/reference/read_meta_info-methods.html
docs/reference/read_surf.html
docs/reference/read_surf_data.html
docs/reference/read_surf_data_seq.html
docs/reference/read_surf_geometry.html
docs/reference/right.html
docs/reference/series-methods.html
docs/reference/show-NeuroSurface-method.html
docs/reference/show-NeuroSurfaceVector-method.html
docs/reference/show-ROISurface-method.html
docs/reference/show-SurfaceDataMetaInfo-method.html
docs/reference/show-SurfaceGeometry-method.html
docs/reference/show-SurfaceGeometryMetaInfo-method.html
docs/reference/smooth-methods.html
docs/reference/sub-NeuroSurfaceVector-missing-missing-ANY-method.html
docs/reference/sub-NeuroSurfaceVector-missing-numeric-ANY-method.html
docs/reference/sub-NeuroSurfaceVector-numeric-missing-ANY-method.html
docs/reference/sub-NeuroSurfaceVector-numeric-numeric-ANY-method.html
docs/reference/sub-sub-NeuroSurfaceVector-numeric-method.html
docs/reference/surf_subset-methods.html
docs/reference/values-methods.html
docs/reference/vertices-methods.html
docs/reference/vertices.html
docs/reference/vol_to_surf.html
docs/reference/write_surf_data.html
inst/extdata/.DS_Store
inst/extdata/Schaefer2018_200Parcels_7Networks_order_FSLMNI152_1mm.nii
inst/extdata/Schaefer2018_200Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
inst/extdata/fsSchaefer2018_200Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
inst/extdata/fsaverage_SurfVol+orig.BRIK.gz
inst/extdata/fsaverage_SurfVol+orig.HEAD.gz
inst/extdata/rscan01_lh.gii
inst/extdata/rscan01_lh.niml.dset
inst/extdata/rscan01_rh.niml.dset
inst/extdata/std.8_fsaverage_lh.MI.1D
inst/extdata/std.8_fsaverage_lh.spec
inst/extdata/std.8_fsaverage_rh.MI.1D
inst/extdata/std.8_fsaverage_rh.spec
inst/extdata/std.8_lh.inflated.asc
inst/extdata/std.8_lh.pial.asc
inst/extdata/std.8_lh.smoothwm.asc
inst/extdata/std.8_lh.sphere.asc
inst/extdata/std.8_lh.sphere.reg.asc
inst/extdata/std.8_lh.white.asc
inst/extdata/std.8_rh.inflated.asc
inst/extdata/std.8_rh.pial.asc
inst/extdata/std.8_rh.smoothwm.asc
inst/extdata/std.8_rh.sphere.asc
inst/extdata/std.8_rh.sphere.reg.asc
inst/extdata/std.8_rh.white.asc
inst/htmlwidgets/.DS_Store
inst/htmlwidgets/lib/neurosurface/neurosurface.js
inst/htmlwidgets/lib/neurosurface/neurosurface.min.js
inst/htmlwidgets/lib/three/OrbitControls.js
inst/htmlwidgets/lib/three/three.min.js
inst/htmlwidgets/neurosurface/.DS_Store
inst/htmlwidgets/neurosurface/.gitignore
inst/htmlwidgets/neurosurface/gulpfile.js
inst/htmlwidgets/neurosurface/package-lock.json
inst/htmlwidgets/neurosurface/package.json
inst/htmlwidgets/neurosurface/src/ColorMap.js
inst/htmlwidgets/neurosurface/src/EventEmitter.js
inst/htmlwidgets/neurosurface/src/NeuroSurfaceViewer.js
inst/htmlwidgets/neurosurface/src/classes.js
inst/htmlwidgets/neurosurface/src/debug.js
inst/htmlwidgets/neurosurface/src/index.js
inst/htmlwidgets/neurosurface/webpack.config.js
inst/htmlwidgets/surfwidget.css
inst/htmlwidgets/surfwidget.js
inst/htmlwidgets/surfwidget.yaml
man/AFNISurfaceFileDescriptor-class.Rd
man/Arith-methods.Rd
man/BilatNeuroSurfaceVector-class.Rd
man/ColorMappedNeuroSurface-class.Rd
man/ColorMappedNeuroSurface.Rd
man/Compare-methods.Rd
man/FreeSurferSurfaceGeometryMetaInfo-class.Rd
man/FreesurferAsciiSurfaceFileDescriptor-class.Rd
man/FreesurferBinarySurfaceFileDescriptor-class.Rd
man/GIFTISurfaceDataMetaInfo-class.Rd
man/GIFTISurfaceFileDescriptor-class.Rd
man/GIFTISurfaceGeometryMetaInfo-class.Rd
man/LabeledNeuroSurface-class.Rd
man/NIMLSurfaceDataMetaInfo-class.Rd
man/NIMLSurfaceFileDescriptor-class.Rd
man/NeuroSurface-class.Rd
man/NeuroSurface.Rd
man/NeuroSurfaceSource-class.Rd
man/NeuroSurfaceVector-class.Rd
man/NeuroSurfaceVector.Rd
man/NeuroSurfaceVectorSource-class.Rd
man/ROISurface-class.Rd
man/ROISurface.Rd
man/ROISurfaceVector-class.Rd
man/ROISurfaceVector.Rd
man/RandomSurfaceSearchlight.Rd
man/SurfaceDataMetaInfo-class.Rd
man/SurfaceDisk.Rd
man/SurfaceGeometry-class.Rd
man/SurfaceGeometry.Rd
man/SurfaceGeometryMetaInfo-class.Rd
man/SurfaceGeometrySource-class.Rd
man/SurfaceSearchlight.Rd
man/VertexColoredNeuroSurface-class.Rd
man/VertexData-class.Rd
man/adjacency-methods.Rd
man/as-methods.Rd
man/as.matrix-methods.Rd
man/as.vector-methods.Rd
man/cluster_threshold-methods.Rd
man/conn_comp-methods.Rd
man/coords-methods.Rd
man/curv_cols.Rd
man/curvature-methods.Rd
man/data_reader-methods.Rd
man/findBoundaries-methods.Rd
man/find_all_neighbors.Rd
man/find_roi_boundaries.Rd
man/geometry-methods.Rd
man/graph-methods.Rd
man/indices-methods.Rd
man/laplacian-methods.Rd
man/left-methods.Rd
man/length-methods.Rd
man/loadFSSurface.Rd
man/load_data-methods.Rd
man/meshToGraph.Rd
man/neighbor_graph-methods.Rd
man/neurosurf.Rd
man/nodes-methods.Rd
man/plot-methods.Rd
man/plot_js-methods.Rd
man/print.Searchlight.Rd
man/projectCoordinates.Rd
man/read_freesurfer_annot.Rd
man/read_meta_info-methods.Rd
man/read_meta_info.Rd
man/read_surf.Rd
man/read_surf_data.Rd
man/read_surf_data_seq.Rd
man/read_surf_geometry.Rd
man/remeshSurface.Rd
man/right-methods.Rd
man/series-methods.Rd
man/series_roi-methods.Rd
man/show-methods.Rd
man/smooth-NeuroSurface-method.Rd
man/smooth-methods.Rd
man/sub-NeuroSurfaceVector-missing-missing-ANY-method.Rd
man/sub-NeuroSurfaceVector-missing-numeric-ANY-method.Rd
man/sub-NeuroSurfaceVector-numeric-missing-ANY-method.Rd
man/sub-NeuroSurfaceVector-numeric-numeric-ANY-method.Rd
man/sub-ROISurface.Rd
man/sub-sub-NeuroSurfaceVector-numeric-method.Rd
man/surfwidget-SurfaceGeometry-method.Rd
man/surfwidget-methods.Rd
man/surfwidget-shiny.Rd
man/updateAlpha.Rd
man/updateColorMap.Rd
man/updateIRange.Rd
man/updateSurfwidgetConfig.Rd
man/updateThreshold.Rd
man/updateVertexColors.Rd
man/values-methods.Rd
man/vertices-methods.Rd
man/view_surface.Rd
man/vol_to_surf.Rd
man/write_surf_data.Rd
neurosurf.Rproj
tests/testthat.R
tests/testthat/test_boundaries_edge_faces.R
tests/testthat/test_boundaries_methods.R
tests/testthat/test_connections.R
tests/testthat/test_data_reader.R
tests/testthat/test_find_all_neighbors.R
tests/testthat/test_io.R
tests/testthat/test_neighborhood_spherical.R
tests/testthat/test_searchlight.R
tests/testthat/test_smoothing.R
tests/www/neurosurface.css
testshiny/test_shiny.R
vignettes/.gitignore
vignettes/displaying-surfaces.Rmd
vignettes/introduction-to-neurosurf.Rmd
