bcm-uga/apTreeshape: Analyses of Phylogenetic Treeshape

Simulation and analysis of phylogenetic tree topologies using statistical indices. It is a companion library of the 'ape' package. It provides additional functions for reading, plotting, manipulating phylogenetic trees. It also offers convenient web-access to public databases, and enables testing null models of macroevolution using corrected test statistics. Trees of class "phylo" (from 'ape' package) can be converted easily. Implements methods described in Bortolussi et al. (2005) <doi:10.1093/bioinformatics/bti798> and Maliet et al. (2017) <doi:10.1101/224295>.

Getting started

Package details

AuthorNicolas Bortolussi, Michael Blum, Eric Durand, Olivier Francois, Odile Maliet
MaintainerMichael Blum <[email protected]>
LicenseGPL (>= 2)
Version1.5-0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("bcm-uga/apTreeshape")
bcm-uga/apTreeshape documentation built on April 4, 2018, 9:19 p.m.