simulate.Yi: Simulates the random variables Y_i
In bcm-uga/apTreeshape: Analyses of Phylogenetic Treeshape
Description
Usage
Arguments
Details
Author(s)
References
View source: R/simulate_tree.R
Description
Simulates the random variables Y_i
Usage
1
simulate.Yi(N, epsilon, beta, n)
Arguments
N
Number of simulated Y_i
epsilon
Minimum size of unsampled splits (see appendix 1)
beta
Imbalance index
n
Number of marks in the interval
Details
(Y_i) are independant random variables with density 2/(λ_ε) exp(-(β+n+1)x) (1-exp(-x))^β
Author(s)
Odile Maliet, Fanny Gascuel & Amaury Lambert
References
Maliet O., Gascuel F., Lambert A. (2018) Ranked tree shapes, non-random
extinctions and the loss of phylogenetic diversity, bioRxiv 224295,
doi: https://doi.org/10.1101/224295
bcm-uga/apTreeshape documentation built on Sept. 26, 2019, 4:56 p.m.
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Description Usage Arguments Details Author(s) References
View source: R/simulate_tree.R
Description
Simulates the random variables Y_i
Usage
1 | simulate.Yi(N, epsilon, beta, n)
|
Arguments
N |
Number of simulated Y_i |
epsilon |
Minimum size of unsampled splits (see appendix 1) |
beta |
Imbalance index |
n |
Number of marks in the interval |
Details
(Y_i) are independant random variables with density 2/(λ_ε) exp(-(β+n+1)x) (1-exp(-x))^β
Author(s)
Odile Maliet, Fanny Gascuel & Amaury Lambert
References
Maliet O., Gascuel F., Lambert A. (2018) Ranked tree shapes, non-random extinctions and the loss of phylogenetic diversity, bioRxiv 224295, doi: https://doi.org/10.1101/224295
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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