Man pages for bcm-uga/pcadapt
Fast Principal Component Analysis for Outlier Detection
| bed2matrix | Convert a bed to a matrix |
| get.pc | Get the principal component the most associated with a... |
| get.pop.names | Retrieve population names |
| get.score.color | Population colorization |
| get_statistics | pcadapt statistics |
| hist_plot | Neutral Distribution Estimation |
| manhattan_plot | Manhattan Plot |
| pcadapt | Principal Component Analysis for outlier detection |
| ped2pcadapt | Convert ped files |
| plot.pcadapt | pcadapt visualization tool |
| print_convert | Summary |
| qq_plot | p-values Q-Q Plot |
| read.pcadapt | File Converter |
| run.pcadapt | Shiny app |
| score_plot | Principal Components Analysis Scores Plot |
| scree_plot | Principal Components Analysis Scree Plot |
| vcf2pcadapt | vcfR-based converter |
| vcf_convert | Convert vcfR genotype matrices |
| writeBed | Write PLINK files |
