vcf2pcadapt: vcfR-based converter
In bcm-uga/pcadapt: Fast Principal Component Analysis for Outlier Detection
vcf2pcadapt R Documentation
vcfR-based converter
Description
vcf2pcadapt uses the package vcfR to extract the genotype information
from a vcf file and exports it under the format required by pcadapt.
Note that this VCF converter is not maintained anymore. Please use PLINK.
Usage
vcf2pcadapt(input, output = "tmp.pcadapt", allele.sep = c("/", "|"))
Arguments
input
a character string specifying the name of the file to be converted.
output
a character string indicating the name of the output file.
allele.sep
a vector of characters indicating what delimiters are used
to separate alleles.
bcm-uga/pcadapt documentation built on April 17, 2024, 8:30 a.m.
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| vcf2pcadapt | R Documentation |
vcfR-based converter
Description
vcf2pcadapt uses the package vcfR to extract the genotype information
from a vcf file and exports it under the format required by pcadapt.
Note that this VCF converter is not maintained anymore. Please use PLINK.
Usage
vcf2pcadapt(input, output = "tmp.pcadapt", allele.sep = c("/", "|"))
Arguments
input |
a character string specifying the name of the file to be converted. |
output |
a character string indicating the name of the output file. |
allele.sep |
a vector of characters indicating what delimiters are used to separate alleles. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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