run.compute.Aph.batch: Compute phytoplankton absorption spectrum in batch mode

In belasi01/RspectroAbs: Processing absorbance spectra from spectrophotometer

Description

This is the third step of the Ap/Aph processing. It calls the compute.Aph for each samples found in the Log file provided as input.

Usage

run.compute.Aph.batch(
  log.file = "Ap_log_TEMPLATE.dat",
  data.path = "./",
  PLOT = FALSE
)

Arguments

log.file	is the name of the ASCII file containing the list of samples to process.
data.path	is the path where the csv folder is located. So the files must be stored in data.path/csv/. Default is "./".
PLOT	is a logical parameter indicating whether the plot are generated in the RStudio interface. Default is FALSE.

Value

It produces plots with the spectra returned by compute.Aph and save the data in a RData file.

Author(s)

Simon Belanger

See Also

compute.Aph

belasi01/RspectroAbs documentation built on July 27, 2020, 9:52 p.m.