generate.Ag.DB: Assemble the CDOM absorption data into a single data base
In belasi01/RspectroAbs: Processing absorbance spectra from spectrophotometer

Description Usage Arguments Value Author(s) See Also

This function assembles the CDOM data in a single data base and generate 1) one RData file, 2) two ASCII files and 3) one plot presenting all CDOM spectra.

generate.Ag.DB(
  log.file = "Ag_log_TEMPLATE.dat",
  data.path = "./",
  MISSION = "YYY",
  MEASURED = FALSE
)

`log.file`	is the name of the ASCII file containing the list of ID to process (see details below).
`data.path`	is the path where the RData folder is located. So the files must be stored in data.path/RData. Default is "./".
`MISSION`	is a character string that will be used to name the output files. The default is "YYY". (i.e. MISSION.Ag.RData; MISSION.Ag.dat; MISSION.Fitted.params.dat; MISSION.Ag.png)
`MEASURED`	if a logical parameter indicating if the fitted parameter is computed using the measured Ag without the red offset. Defautl is FALSE

the function returns a list containing the following fields: waves, ID, Station, Depth,Ag.raw, Ag.offset,S275_295, S350_400, S350_500, Sr, K, a440.

This list (Ag.DB) is save in MISSION.Ag.RData. The Ag.offset spectra are saved in ASCII format in MISSION.Ag.dat, while the fitting parameters are saved in MISSION.Fitted.params.dat. Finally, a PNG file showing all CDOM spectra ise created.

Simon Bélanger

process.Ag, run.process.Ag.batch

belasi01/RspectroAbs documentation built on July 27, 2020, 9:52 p.m.