Stochastic Approximation Expectation Maximization (SAEM) Algorithm

coef.saemix | Extract coefficients from a saemix fit |

conddist.saemix | Estimate conditional mean and variance of individual... |

cow.saemix | Evolution of the weight of 560 cows, in SAEM format |

default.saemix.plots | Wrapper functions to produce certain sets of default plots |

extract-methods | Get/set methods for SaemixData object |

fim.saemix | Computes the Fisher Information Matrix by linearisation |

fitted.saemix | Extract Model Predictions |

initialize-methods | Methods for Function initialize |

llgq.saemix | Log-likelihood using Gaussian Quadrature |

llis.saemix | Log-likelihood using Importance Sampling |

logLik | Extract likelihood from a saemixObject resulting from a call... |

map.saemix | Estimates of the individual parameters (conditional mode) |

oxboys.saemix | Heights of Boys in Oxford |

PD1.saemix | Data simulated according to an Emax response model, in SAEM... |

plot-methods | Methods for Function plot |

plot-SaemixData | Plot of longitudinal data |

plot-SaemixModel | Plot model predictions using an SaemixModel object |

plot-SaemixObject-method | General plot function from SAEM |

predict-methods | Methods for Function predict |

print-methods | Methods for Function print |

psi-methods | Functions to extract the individual estimates of the... |

read-methods | Methods for Function read |

resid.saemix | Extract Model Residuals |

saemix | Stochastic Approximation Expectation Maximization (SAEM)... |

saemixControl | List of options for running the algorithm SAEM |

saemixData | Function to create a SaemixData object |

SaemixData-class | Class "SaemixData" |

saemix.internal | Internal saemix objects |

saemixModel | Function to create a SaemixModel object |

SaemixModel-class | Class "SaemixModel" |

SaemixObject-class | Class "SaemixObject" |

saemix-package | Stochastic Approximation Expectation Maximization (SAEM)... |

saemix.plot.data | Functions implementing each type of plot in SAEM |

saemix.plot.select | Plots of the results obtained by SAEM |

saemix.plot.setoptions | Function setting the default options for the plots in SAEM |

saemix.predict | Compute model predictions after an saemix fit |

SaemixRes-class | Class "SaemixRes" |

showall-methods | Methods for Function showall |

show-methods | Methods for Function show |

simul.saemix | Perform simulations under the model |

sub-SaemixModel-method | Get/set methods for SaemixModel object |

sub-SaemixObject-method | Get/set methods for SaemixObject object |

sub-SaemixRes-method | Get/set methods for SaemixRes object |

subset.SaemixData | Data subsetting |

summary-methods | Methods for Function summary |

testnpde | Tests for normalised prediction distribution errors |

theo.saemix | Pharmacokinetics of theophylline, in SAEM format |

transformCatCov | Transform covariates |

transformContCov | Transform covariates |

validate.names | Name validation (## )Helper function not intended to be... |

vcov | Extracts the Variance-Covariance Matrix for a Fitted Model... |

yield.saemix | Wheat yield in crops treated with fertiliser, in SAEM format |

z[_--methods | Methods for "set" Function [<- |

z[-methods | Methods for "get" Function [ |

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