observed_cases: Generate reported case trajectories for each day when cases...

In ben18785/incidenceinflation: Estimate R0 Given Case Reporting Delays

Generate reported case trajectories for each day when cases appear

Description

Generate reported case trajectories for each day when cases appear

Usage

observed_cases(cases_true, reporting_parameters, days_max_follow_up = 30)

Arguments

cases_true	a vector of true cases originating each day
reporting_parameters	either a named list of 'mean' and 'sd' of gamma distribution indicating a single reporting delay distribution for the whole period or a tibble with columns: 'time_onset', 'mean', 'sd' indicating the reporting delay distribution for each time period
days_max_follow_up	max days at which to simulate reporting case trajectory

Value

a tibble with observed case trajectories for each time of onset

Examples

library(incidenceinflation)
observed_cases(stats::rpois(5, 5), list(mean=5, sd=1))

ben18785/incidenceinflation documentation built on Feb. 8, 2024, 2:36 a.m.