Man pages for benaug/SPIM
This package contains MCMC algorithms in R and (some) Rcpp for various Spatial Partial Identity Models. Prospective users should email Ben before using.
| build.data | Format encounter data for SPIM or regular SCR. Open SPIM to... |
| mcmc.2side | Spatial partial identity MCMC algorithm. |
| mcmc.CatSPIM | Fit the categorical spatial partial identity model (catSPIM) |
| mcmc.conCatSMR | Fit the conventional (marking process not modeled)... |
| mcmc.conCatSMR.df | Fit the categorical spatial mark resight model with detection... |
| mcmc.conCatSMR.natural | Fit the categorical spatial mark resight model for natural... |
| mcmc.genCatSMR | Fit the generalized categorical spatial mark resight model |
| mcmc.genCatSMR.df | Fit the generalized categorical spatial mark resight model... |
| mcmc.genCatSMR.move | Fit the generalized categorical spatial mark resight model... |
| mcmc.SCR | Run MCMC algorithm for basic SCR model. |
| pID | Produce the posteriors for P(ID_L_i = ID_R_j) from the... |
| SCR2DNAmcmc | Run MCMC algorithm for basic SCR model with 2 observation... |
| SCR2DNAPPcheck | Calculate goodness of fit statistics for a model fit by... |
| SCRPPcheck | Calculate goodness of fit statistics for a model fit by... |
| sim2side | Simulate data from camera trap SCR study with partial... |
| sim2side.plot | Plot trapping array and realized capture results of simulated... |
| sim2sidetf | Simulate data from camera trap SCR study with partial... |
| simCatSPIM | Simulate data from the categorical spatial partial identity... |
| sim.conCatSMR | Simulate data from the conventional (no marking process)... |
| sim.conCatSMR.df | Simulate data from the conventional (no marking process)... |
| sim.genCatSMR | Simulate data from the generalized categorical spatial mark... |
| sim.genCatSMR.df | Simulate data from the generalized categorical spatial mark... |
| sim.genCatSMR.move | Simulate data from the generalized categorical spatial mark... |
| simSCR | Simulate data from a SCR study |
| simSCR2DNA | Simulate data from a SCR study with DNA collected from scat... |
| simSCRtf | Simulate data from a SCR study and simulate a random trap... |
