sim2side.plot: Plot trapping array and realized capture results of simulated...

In benaug/SPIM: This package contains MCMC algorithms in R and (some) Rcpp for various Spatial Partial Identity Models. Prospective users should email Ben before using.

Plot trapping array and realized capture results of simulated data set

Description

This function plots the realized capture results from the simulation function. It plots the juxtaposition of traps and activity centers, differentiating between complete identity individuals (B), partial identity individuals captured on the left side only (L), right side only (R), left and right side but not simultanously (LR), and uncaptured individuals.

Usage

sim2side.plot(data, offset = 0.15, cexX = 1.5, cexB = 3, cexS = 3,
  cex0 = 1, cexT = 1, main = "", plotACs = TRUE, plottimes = 1)

Arguments

data	a list produced by sim2side or in the same format
offset	the amount to offset each camera for double traps
cexX	the cex for representing the cameras
cexB	the cex for complete identity activity centers
cexS	the cex for partial identity activity centers
cex0	the cex for uncaptured activity centers
cexT	the cex for the text indicating B, L, R, or LR captures for each activity center
main	the title for the plot

Author(s)

Ben Augustine

Examples

## Not run: 
N=50
p01=0.13
p02=0.2
lam01=-log(1-p01)
lam02=-log(1-p02)
sigma=0.50
K=5
buff=2
xlim<- c(1,10)
ylim<- c(1,10)
X<- expand.grid(3:8,3:8) #6x6 trapping array
X=cbind(X,1) #add number of cameras at each trap
X[which(X[,2]%in%c(4,7)),3]=2 #switch the second and fifth row of traps to double cameras
#Simulate some data
data=sim2side(N=N,lam01=lam01,lam02=lam02,sigma=sigma,K=K,X=X,buff=buff)
sim2side.plot(data)

## End(Not run)

benaug/SPIM documentation built on April 28, 2024, 7:27 a.m.