Man pages for benaug/SPIM
This package contains MCMC algorithms in R and Rcpp for various SCR models, including the spatial partial identification model.

build.dataFormat encounter data for SPIM or regular SCR. Open SPIM to...
mcmc.2sideSpatial partial identity MCMC algorithm.
mcmc.2side.indRun MCMC algorithm for the naive independence estimator.
mcmc.2side.SCRIPPSpatial partial identity MCMC algorithm with inhomogenous...
mcmc.CatSPIMFit the categorical spatial partial identity model (catSPIM)
mcmc.conCatSMRFit the conventional (marking process not modeled)...
mcmc.conCatSMR.dfFit the categorical spatial mark resight model with detection...
mcmc.conCatSMR.naturalFit the categorical spatial mark resight model for natural...
mcmc.genCatSMRFit the generalized categorical spatial mark resight model
mcmc.genCatSMR.dfFit the generalized categorical spatial mark resight model...
mcmc.genCatSMR.moveFit the generalized categorical spatial mark resight model...
mcmc.SCRRun MCMC algorithm for basic SCR model.
mcmc.SCRIPPRun MCMC algorithm for SCR model with inhomogenous density...
pIDProduce the posteriors for P(ID_L_i = ID_R_j) from the...
SCR2DNAmcmcRun MCMC algorithm for basic SCR model with 2 observation...
SCR2DNAPPcheckCalculate goodness of fit statistics for a model fit by...
SCRPPcheckCalculate goodness of fit statistics for a model fit by...
sim2sideSimulate data from camera trap SCR study with partial...
sim2side.plotPlot trapping array and realized capture results of simulated...
sim2sideSCRIPPSimulate data from camera trap SCR study with inhomogenous...
sim2sidetfSimulate data from camera trap SCR study with partial...
simCatSPIMSimulate data from the categorical spatial partial identity...
sim.conCatSMRSimulate data from the conventional (no marking process)...
sim.conCatSMR.dfSimulate data from the conventional (no marking process)...
sim.genCatSMRSimulate data from the generalized categorical spatial mark...
sim.genCatSMR.dfSimulate data from the generalized categorical spatial mark...
sim.genCatSMR.moveSimulate data from the generalized categorical spatial mark...
simgenSPIMSimulate data with potentially partial individual indentities
simOpenAsySCRSimulate data from a Open population SCR study. Update help...
simOpenSPIMSimulate data from open population SPIM. Update help file...
simSCRSimulate data from a SCR study
simSCR2DNASimulate data from a SCR study with DNA collected from scat...
simSCRIPPSimulate data from camera trap SCR study with inhomogenous...
simSCRtfSimulate data from a SCR study and simulate a random trap...
benaug/SPIM documentation built on Dec. 15, 2018, 2:10 p.m.