API for benaug/SPIM
This package contains MCMC algorithms in R and Rcpp for various SCR models, including the spatial partial identification model.

Global functions
LRmatch Source code
LRmatchOpen Source code
MCMC Source code
MCMC1 Source code
MCMC1b Source code
MCMC1tf Source code
MCMC2 Source code
MCMCInd Source code
MCMCInd2 Source code
MCMCInd3 Source code
MCMCtf Source code
MCMCtf2 Source code
SCR2DNAMbmcmc Source code
SCR2DNAPPcheck Man page Source code
SCR2DNAmcmc Man page Source code
SCRIPPmcmc Source code
SCRIPPmcmcRcpp Source code
SCRMbmcmc Source code
SCRPPcheck Man page Source code
SCRlik Source code
SCRliktf Source code
SCRmcmc Source code
SCRmcmcOpenAsy Source code
SCRmcmcOpenSPIM Source code
SCRmcmcOpenSPIMRcpp Source code
SCRmcmcRcpp Source code
SCRmcmctf Source code
SCRmcmctfRcpp Source code
build.data Man page Source code
calclamd Source code
cellprobs Source code
cellprobsOpen Source code
cellprobsSCR Source code Source code
e2dist Source code Source code Source code Source code Source code Source code Source code
fulllik Source code
fulllikInd Source code
fulllikInd1D Source code
fulllikInd1D2 Source code
fulllikInd1D3 Source code
fulllikInd2 Source code
fulllikInd3 Source code
fullliktf Source code
fullliktf2 Source code
genSPIMmcmc Source code
inout Source code
inoutCpp Source code
inoutCppOpen Source code
intersect Source code
mcmc.2side Man page Source code
mcmc.2side.SCRIPP Man page Source code
mcmc.2side.SCRIPP.R Source code
mcmc.2side.SCRIPP.Rcpp Source code
mcmc.2side.ind Man page Source code
mcmc.2side.ind2 Source code
mcmc.2side.ind2Rcpp Source code
mcmc.2side.ind3 Source code
mcmc.2side.ind3Rcpp Source code
mcmc.2sideR Source code
mcmc.2sideRcpp Source code
mcmc.2sidetf Source code
mcmc.2sidetfFullRcpp Source code
mcmc.2sidetfRcpp Source code
mcmc.SCR Man page Source code
mcmc.SCRIPP Man page Source code
mcmc_Open_SPIM Source code
pID Man page Source code
sim2side Man page Source code
sim2side.plot Man page Source code
sim2sideSCRIPP Man page Source code
sim2sidetf Man page Source code
simOpenAsySCR Man page Source code
simOpenSPIM Man page Source code
simSCR Man page Source code
simSCR2DNA Man page Source code
simSCRIPP Man page Source code
simSCRhet Source code
simSCRtf Man page Source code
simgenSPIM Man page Man page Source code Source code
swapC Source code
upbeta Source code
updateACs Source code
updateACs2 Source code
updateACsInd Source code
updateACsInd2 Source code
updateDfun Source code
updatePsi Source code
updatePsi2 Source code
updatePsiInd Source code
updatePsiInd2 Source code
updateparms Source code
updateparmsInd Source code
updateparmsInd2 Source code
benaug/SPIM documentation built on Dec. 4, 2017, 11:04 a.m.