This package contains MCMC algorithms in R and Rcpp for various SCR models, including the spatial partial identification model.

Global functions | |
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HazACup | Source code |

LRmatch | Source code |

LRmatchOpen | Source code |

MCMC1 | Source code |

MCMC1b | Source code |

MCMC2 | Source code |

MCMC2side | Source code |

MCMCInd | Source code |

MCMCInd2 | Source code |

MCMCInd3 | Source code |

MCMCtf2 | Source code |

SCR2DNAMbmcmc | Source code |

SCR2DNAPPcheck | Man page Source code |

SCR2DNAmcmc | Man page Source code |

SCRIPPmcmc | Source code |

SCRIPPmcmcRcpp | Source code |

SCRMbmcmc | Source code |

SCRPPcheck | Man page Source code |

SCRlik | Source code |

SCRmcmc | Source code |

SCRmcmcOpenAsy | Source code |

SCRmcmcOpenSPIM | Source code |

SCRmcmcOpenSPIMRcpp | Source code |

SCRmcmcRcpp | Source code |

SCRmcmctfRcpp | Source code |

arma_setdiff | Source code |

build.data | Man page Source code |

calclamd | Source code |

cellprobsOpen | Source code |

cellprobsSCR | Source code Source code |

e2dist | Source code Source code Source code Source code Source code Source code Source code |

findPossible2D | Source code |

fulllik | Source code |

fulllikInd | Source code |

fulllikInd1D | Source code |

fulllikInd1D2 | Source code |

fulllikInd1D3 | Source code |

fulllikInd2 | Source code |

fulllikInd3 | Source code |

fullliktf | Source code |

genCatSMR.PPcheck | Source code |

genSPIMmcmc | Source code |

genSPIMmcmc2D | Source code |

genSPIMmcmcRcpp | Source code |

inout | Source code |

inoutCpp | Source code |

inoutCppOpen | Source code |

intersect | Source code |

intlikRcpp | Source code |

mcmc.2side | Man page Source code |

mcmc.2side.SCRIPP | Man page Source code |

mcmc.2side.SCRIPP.R | Source code |

mcmc.2side.SCRIPP.Rcpp | Source code |

mcmc.2side.ind | Man page Source code |

mcmc.2side.ind2 | Source code |

mcmc.2side.ind2Rcpp | Source code |

mcmc.2side.ind3 | Source code |

mcmc.2side.ind3Rcpp | Source code |

mcmc.2sideR | Source code |

mcmc.2sideRcpp | Source code |

mcmc.2sidetf | Source code |

mcmc.2sidetfFullRcpp | Source code |

mcmc.CatSPIM | Man page Source code |

mcmc.SCR | Man page Source code |

mcmc.SCRIPP | Man page Source code |

mcmc.conCatSMR | Man page Source code |

mcmc.conCatSMR.df | Man page Source code |

mcmc.conCatSMR.natural | Man page Source code |

mcmc.genCatSMR | Man page Source code |

mcmc.genCatSMR.df | Man page Source code |

mcmc.genCatSMR.dfa | Source code |

mcmc.genCatSMR.dfb | Source code |

mcmc.genCatSMR.move | Man page Source code |

mcmc.genCatSMR.movea | Source code |

mcmc.genCatSMR.moveb | Source code |

mcmc.genCatSMRa | Source code |

mcmc.genCatSMRb | Source code |

mcmc_Open_SPIM | Source code |

pID | Man page Source code |

sim.conCatSMR | Man page Source code |

sim.conCatSMR.df | Man page Source code |

sim.genCatSMR | Man page Source code |

sim.genCatSMR.df | Man page Source code |

sim.genCatSMR.move | Man page Source code |

sim2side | Man page Source code |

sim2side.plot | Man page Source code |

sim2sideSCRIPP | Man page Source code |

sim2sidetf | Man page Source code |

simCatSPIM | Man page Source code |

simOpenAsySCR | Man page Source code |

simOpenSPIM | Man page Source code |

simSCR | Man page Source code |

simSCR2DNA | Man page Source code |

simSCRIPP | Man page Source code |

simSCRhet | Source code |

simSCRtf | Man page Source code |

simgenSPIM | Man page Man page Source code Source code |

upbeta | Source code |

updateACsInd | Source code |

updateACsInd2 | Source code |

updatePsiInd | Source code |

updatePsiInd2 | Source code |

updateparmsInd | Source code |

updateparmsInd2 | Source code |

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