AffyClariomSPDInfoPkgSeed-class: Class "AffyClariomSPDInfoPkgSeed"

In benilton/pdInfoBuilder: Platform Design Information Package Builder

Description

PD Info Package Seed for Affymetrix Clariom S Arrays

Objects from the Class

Objects can be created by calls of the form new("AffyClariomSPDInfoPkgSeed", pgfFile, clfFile, coreMps, transFile, ...).

Slots

pgfFile:

PGF filename

clfFile:

CLF filename

coreMps:

MPS filename

transFile:

Transcript annotation CSV file

chipName:

Name of the chip or platform

manufacturer:

chip/platform manufacturer

url:

chip URL

genomebuild:

The genome build this platform is based upon.

organism:

organism for chip.

species:

species for chip.

version:

A character vector giving the version number of the package.

license:

The license of the package

author:

Author of the package

email:

An email address to use in the Maintainer field

biocViews:

Character data for the biocViews field of the DESCRIPTION file

Methods

chipName

chipName

getGeometry

initialize

makePdInfoPackage

package creator

Examples

showClass("AffyClariomSPDInfoPkgSeed")

benilton/pdInfoBuilder documentation built on Dec. 27, 2019, 12:14 a.m.