NgsTilingPDInfoPkgSeed-class: Class "NgsTilingPDInfoPkgSeed"

In benilton/pdInfoBuilder: Platform Design Information Package Builder

Class "NgsTilingPDInfoPkgSeed"

Description

PDInfo package Seed for NimbleGen Tiling arrays

Objects from the Class

Objects can be created by calls of the form new("NgsTilingPDInfoPkgSeed", ndfFile, xysFile, pairFile, posFile ...).

Slots

ndfFile:

NDF (NimbleGen Design) file

xysFile:

XYS File - used as template

posFile:

POS (Positions) file

chipName:

Name of the chip or platform

manufacturer:

chip/platform manufacturer

url:

chip URL

genomebuild:

The genome build this platform is based upon.

organism:

organism for chip.

species:

species for chip.

version:

A character vector giving the version number of the package.

license:

The license of the package

author:

Author of the package

email:

An email address to use in the Maintainer field

biocViews:

Character data for the biocViews field of the DESCRIPTION file

Methods

makePdInfoPackage

signature(.Object = "NgsTilingPDInfoPkgSeed"): ...

chipName

signature(object = "NimbleGenPDInfoPkgSeed"): ...

getGeometry

signature(object = "NimbleGenPDInfoPkgSeed"): ...

Examples

showClass("NgsTilingPDInfoPkgSeed")

benilton/pdInfoBuilder documentation built on July 3, 2024, 12:23 p.m.