AffySTPDInfoPkgSeed-class: Class "AffySTPDInfoPkgSeed" for the Sense Target gene-level...

In benilton/pdInfoBuilder: Platform Design Information Package Builder

Class "AffySTPDInfoPkgSeed" for the Sense Target gene-level array

Description

container for parameters related to pdmapping package construction for ST type arrays

Objects from the Class

Objects can be created by calls of the form new("AffySTPDInfoPkgSeed", pgfFile, clfFile, probeFile, transFile, ...).

Slots

pgfFile:

Object of class "ScalarCharacter" path to pgf

clfFile:

Object of class "ScalarCharacter" path to clf

probeFile:

Object of class "ScalarCharacter", path to probe sequence file (Optional)

transFile:

Object of class "ScalarCharacter", path to trans file (Optional)

chipName:

Name of the chip or platform

manufacturer:

chip/platform manufacturer

url:

chip URL

genomebuild:

The genome build this platform is based upon.

organism:

organism for chip.

species:

species for chip.

version:

A character vector giving the version number of the package.

license:

The license of the package

author:

Author of the package

email:

An email address to use in the Maintainer field

biocViews:

Character data for the biocViews field of the DESCRIPTION file

Methods

chipName

signature(object = "AffySTPDInfoPkgSeed"): ...

getGeometry

signature(object = "AffySTPDInfoPkgSeed"): ...

makePdInfoPackage

signature(object = "AffySTPDInfoPkgSeed"): ...

Author(s)

B. Carvalho

Examples

showClass("AffySTPDInfoPkgSeed")

benilton/pdInfoBuilder documentation built on July 3, 2024, 12:23 p.m.