derep-class: A class representing dereplicated sequences

In benjjneb/dada2: Accurate, high-resolution sample inference from amplicon sequencing data

A class representing dereplicated sequences

Description

A list with the following three members.

• $uniques: Named integer vector. Named by the unique sequence, valued by abundance.

• $quals: Numeric matrix of average quality scores by position for each unique. Uniques are rows, positions are cols.

• $map: Integer vector of length the number of reads, and value the index (in $uniques) of the unique to which that read was assigned.

This can be created from a FastQ sequence file using derepFastq

See Also

derepFastq

benjjneb/dada2 documentation built on Dec. 5, 2024, 4:02 p.m.