derep-class: A class representing dereplicated sequences
In benjjneb/dada2: Accurate, high-resolution sample inference from amplicon sequencing data
derep-class R Documentation
A class representing dereplicated sequences
Description
A list with the following three members.
$uniques: Named integer vector. Named by the unique sequence, valued by abundance.
$quals: Numeric matrix of average quality scores by position for each unique. Uniques are rows, positions are cols.
$map: Integer vector of length the number of reads, and value the index (in $uniques) of the unique to which that read was assigned.
This can be created from a FastQ sequence file using
derepFastq
See Also
derepFastq
benjjneb/dada2 documentation built on Feb. 1, 2024, 10:50 p.m.
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| derep-class | R Documentation |
A class representing dereplicated sequences
Description
A list with the following three members.
$uniques: Named integer vector. Named by the unique sequence, valued by abundance.
$quals: Numeric matrix of average quality scores by position for each unique. Uniques are rows, positions are cols.
$map: Integer vector of length the number of reads, and value the index (in $uniques) of the unique to which that read was assigned.
This can be created from a FastQ sequence file using
derepFastq
See Also
derepFastq
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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