makeSpeciesFasta_Silva: This function creates the dada2 assignSpecies fasta file for...
In benjjneb/dada2: Accurate, high-resolution sample inference from amplicon sequencing data
makeSpeciesFasta_Silva R Documentation
This function creates the dada2 assignSpecies fasta file for Silva
from the SILVA_[VERSION]_SSURef_tax_silva.fasta file (NOT the NR99 file).
Description
## Silva release v138.2
dada2:::makeSpeciesFasta_Silva("~/tax/silva/v138_2/SILVA_138.2_SSURef_tax_silva.fasta.gz",
"~/Desktop/silva_v138.2_assignSpecies.fa.gz")
Usage
makeSpeciesFasta_Silva(fin, fout, compress = TRUE)
Details
Output: 352047 sequences with genus/species binomial annotation output.
benjjneb/dada2 documentation built on Dec. 5, 2024, 4:02 p.m.
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| makeSpeciesFasta_Silva | R Documentation |
This function creates the dada2 assignSpecies fasta file for Silva from the SILVA_[VERSION]_SSURef_tax_silva.fasta file (NOT the NR99 file).
Description
## Silva release v138.2 dada2:::makeSpeciesFasta_Silva("~/tax/silva/v138_2/SILVA_138.2_SSURef_tax_silva.fasta.gz", "~/Desktop/silva_v138.2_assignSpecies.fa.gz")
Usage
makeSpeciesFasta_Silva(fin, fout, compress = TRUE)
Details
Output: 352047 sequences with genus/species binomial annotation output.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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