makeSpeciesFasta_Silva: This function creates the dada2 assignSpecies fasta file for...

In benjjneb/dada2: Accurate, high-resolution sample inference from amplicon sequencing data

This function creates the dada2 assignSpecies fasta file for Silva from the SILVA_[VERSION]_SSURef_tax_silva.fasta file

Description

## Silva release v128 dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_128_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v128.fa.gz")

Usage

makeSpeciesFasta_Silva(fin, fout, compress = TRUE)

Details

## Silva release v132 dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_132_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v132.fa.gz")

Output: 313502 sequences with genus/species binomial annotation output.

benjjneb/dada2 documentation built on June 2, 2024, 2:57 a.m.