qtables2: Internal tables function
In benjjneb/dada2: Accurate, high-resolution sample inference from amplicon sequencing data
qtables2 R Documentation
Internal tables function
Description
Internal function to replicate ShortRead::tables functionality while also returning average quals and a map
from reads to uniques
Usage
qtables2(x, qeff = FALSE, handle.zerolen = TRUE)
Arguments
x
ShortReadQ.
The ShortReadQ-class object to table (or dereplicate).
qeff
logical(1).
Calculate average quality by first transforming to expected error rate.
handle.zerolen
logical(1).
Default TRUE. If TRUE, gracefully excludes zero-length sequences.
Value
List.
Matches format of derep-class object.
benjjneb/dada2 documentation built on Nov. 16, 2024, 6:45 a.m.
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| qtables2 | R Documentation |
Internal tables function
Description
Internal function to replicate ShortRead::tables functionality while also returning average quals and a map from reads to uniques
Usage
qtables2(x, qeff = FALSE, handle.zerolen = TRUE)
Arguments
x |
ShortReadQ. The ShortReadQ-class object to table (or dereplicate). |
qeff |
|
handle.zerolen |
|
Value
List. Matches format of derep-class object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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