adaptiveHM.main.swHM: Detect DE genes by swHM

In benliemory/adaptiveHM: Adaptive Hierarchical Model (adaptiveHM)

Description

swHM applies HM in the "neighbouring" genes. Only rank information from historical data is used.

Usage

adaptiveHM.main.swHM(Control, Treatment, IPBT.prior = FALSE, winSize = 50, history = NA, IPBT.id = NA)

Arguments

Control	Data matrix for control samples.
Treatment	Data matrix for treatment samples.
IPBT.prior	Logical value to specify using external historical data or IPBT prior.
winSize	Window size used in swHM. It is better to use GDM to determine optimal number of groups first.
history	External historical data is required to provide if using external historical data.
IPBT.id	IPBT prior id is required if using IPBT prior.

benliemory/adaptiveHM documentation built on May 12, 2019, 12:57 p.m.