API for benoukraflab/TFregulomeR
TFregulomeR reveals transcription factors’ context-specific features and functions
| Global functions | |
|---|---|
| .construct_api | Man page Source code |
| .loadPeaks | Man page Source code |
| .searchMotif | Man page Source code |
| LocalDatabase | Source code |
| WebDatabase | Source code |
| addDistanceAndClean | Source code |
| cofactorReport | Man page Source code |
| commonPeakResult | Man page Source code |
| commonPeaks | Man page Source code |
| dataBrowser | Man page Source code |
| exclusivePeakResult | Man page Source code |
| exclusivePeaks | Man page Source code |
| exportMMPFM | Man page Source code |
| fetch_peak_info | Source code |
| formBetaScoreDistri | Source code |
| formBetaScoreFromSeq | Source code |
| formGenomeAnnotateTableBody | Source code |
| formHTMLoutput | Source code |
| formMatrixFromSeq | Source code |
| genomeAnnotate | Man page Source code |
| get.jsondata | Source code |
| get.names | Source code |
| get_html_content | Source code |
| greatAnnotate | Man page Source code |
| heamap.invisible | Source code |
| hg38Tohg19 | Source code |
| html_3d.report | Source code |
| html_report | Source code |
| interactome3D | Man page Source code |
| intersectPeakMatrix | Man page Source code |
| intersectPeakMatrixResult | Man page Source code |
| intersect_peak_regions | Source code |
| loadPeaks | Man page Source code |
| load_peak_list | Source code |
| motifDistrib | Man page Source code |
| output_message | Man page Source code |
| plotDistrib | Man page Source code |
| plotLogo | Man page Source code |
| rbokehPlot | Source code |
| readBetaScoreMatrix | Source code |
| readMMmotif | Source code |
| save_BetaScore | Source code |
| save_motifPFM | Source code |
| searchMotif | Man page Source code |
| specify_decimal | Source code |
| toTFBSTools | Man page Source code |
