dot-searchMotif: Search motif PFM and beta score matrix (if source is...

.searchMotifR Documentation

Search motif PFM and beta score matrix (if source is MethMotif) for a given TFregulomeR ID in TFregulomeR

Description

This function allows you to obtain motif PFM matrix and beta score matrix (if source is MethMotif) for a given TFregulomeR ID in TFregulomeR

Usage

.searchMotif(id, motif_format = "MEME", api_object)

Arguments

id

Required. TFregulomeR ID.

motif_format

Motif PFM format, either in MEME by default or TRANSFAC.

api_object

s4 object for interacting with the TFregulome database

Value

MethMotif class object

Examples

K562_CEBPB <- searchMotif(id = "MM1_HSA_K562_CEBPB")
K562_CEBPB_transfac <- searchMotif(id = "MM1_HSA_K562_CEBPB",
                                   motif_format = "TRANSFAC")

benoukraflab/TFregulomeR documentation built on July 8, 2024, 5:03 p.m.